RNA–Protein interactions for RNA: ENST00000220429.12

GABPB1-201, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-201ENST00000220429 GNAI1P63096 354 aa16.63■□□□□ 0.25
GABPB1-201ENST00000220429 GABPB1Q06547 395 aaPredicted RBP16.63■□□□□ 0.25
GABPB1-201ENST00000220429 RAB3GAP1Q15042 981 aa16.63■□□□□ 0.25
GABPB1-201ENST00000220429 XRN1Q8IZH2 1706 aaKnown RBP16.63■□□□□ 0.25
GABPB1-201ENST00000220429 CLGNO14967 610 aa16.62■□□□□ 0.25
GABPB1-201ENST00000220429 KLHL40Q2TBA0 621 aa16.62■□□□□ 0.25
GABPB1-201ENST00000220429 USP31Q70CQ4 1352 aa16.62■□□□□ 0.25
GABPB1-201ENST00000220429 TRIM6-TRIM34B2RNG4 842 aa16.62■□□□□ 0.25
GABPB1-201ENST00000220429 VAMP4O75379 141 aa16.62■□□□□ 0.25
GABPB1-201ENST00000220429 U2AF2P26368 475 aaKnown RBP eCLIP16.62■□□□□ 0.25
GABPB1-201ENST00000220429 KIAA2012Q0VF49 1180 aa16.62■□□□□ 0.25
GABPB1-201ENST00000220429 ZNF428Q96B54 188 aa16.62■□□□□ 0.25
GABPB1-201ENST00000220429 TRIM34Q9BYJ4 488 aa16.62■□□□□ 0.25
GABPB1-201ENST00000220429 MBIPQ9NS73 344 aa16.62■□□□□ 0.25
GABPB1-201ENST00000220429 IPO8O15397 1037 aaKnown RBP16.61■□□□□ 0.25
GABPB1-201ENST00000220429 BRPF1P55201 1214 aaPredicted RBP16.61■□□□□ 0.25
GABPB1-201ENST00000220429 TSPYL6Q8N831 410 aa16.61■□□□□ 0.25
GABPB1-201ENST00000220429 FEZ1Q99689 392 aa16.61■□□□□ 0.25
GABPB1-201ENST00000220429 C22orf23Q9BZE7 217 aa16.61■□□□□ 0.25
GABPB1-201ENST00000220429 KCNG1Q9UIX4 513 aa16.61■□□□□ 0.25
GABPB1-201ENST00000220429 FAM83GA6ND36 823 aa16.61■□□□□ 0.25
GABPB1-201ENST00000220429 TULP2O00295 520 aa16.61■□□□□ 0.25
GABPB1-201ENST00000220429 DDX49Q9Y6V7 483 aaKnown RBP16.61■□□□□ 0.25
GABPB1-201ENST00000220429 RGPD1P0DJD0 1748 aa16.61■□□□□ 0.25
GABPB1-201ENST00000220429 CAPN2P17655 700 aa16.61■□□□□ 0.25
GABPB1-201ENST00000220429 PSEN1P49768 467 aa16.61■□□□□ 0.25
GABPB1-201ENST00000220429 LMOD3Q0VAK6 560 aa16.61■□□□□ 0.25
GABPB1-201ENST00000220429 BCL2L12Q9HB09 334 aa16.61■□□□□ 0.25
GABPB1-201ENST00000220429 RBSNQ9H1K0 784 aa16.6■□□□□ 0.25
GABPB1-201ENST00000220429 FAM177BA6PVY3 158 aa16.6■□□□□ 0.25
GABPB1-201ENST00000220429 SOX12O15370 315 aa16.6■□□□□ 0.25
GABPB1-201ENST00000220429 HSP90AB2PQ58FF8 381 aa16.6■□□□□ 0.25
GABPB1-201ENST00000220429 SULT6B1Q6IMI4 303 aa16.6■□□□□ 0.25
GABPB1-201ENST00000220429 CFAP44Q96MT7 982 aa16.6■□□□□ 0.25
GABPB1-201ENST00000220429 YY1AP1Q9H869 796 aa16.6■□□□□ 0.25
GABPB1-201ENST00000220429 RIMS1Q86UR5 1692 aaKnown RBP16.59■□□□□ 0.25
GABPB1-201ENST00000220429 FMN2Q9NZ56 1722 aa16.59■□□□□ 0.25
GABPB1-201ENST00000220429 GOLGA6L22H0YM25 854 aa16.59■□□□□ 0.25
GABPB1-201ENST00000220429 ZBTB40Q9NUA8 1239 aa16.59■□□□□ 0.25
GABPB1-201ENST00000220429 OGFRQ9NZT2 677 aa16.59■□□□□ 0.25
GABPB1-201ENST00000220429 HDAC1Q13547 482 aaPredicted RBP16.59■□□□□ 0.25
GABPB1-201ENST00000220429 DCTN1Q14203 1278 aa16.59■□□□□ 0.25
GABPB1-201ENST00000220429 TTC21AQ8NDW8 1320 aa16.58■□□□□ 0.25
GABPB1-201ENST00000220429 CNPY4Q8N129 248 aa16.58■□□□□ 0.25
GABPB1-201ENST00000220429 MRPL50Q8N5N7 158 aaKnown RBP16.58■□□□□ 0.25
GABPB1-201ENST00000220429 TSPYL1Q9H0U9 437 aa16.58■□□□□ 0.25
GABPB1-201ENST00000220429 ELL2O00472 640 aaPredicted RBP16.58■□□□□ 0.24
GABPB1-201ENST00000220429 APPP05067 770 aa16.58■□□□□ 0.24
GABPB1-201ENST00000220429 SLFN14P0C7P3 912 aa16.58■□□□□ 0.24
GABPB1-201ENST00000220429 TRHP20396 242 aaPredicted RBP16.58■□□□□ 0.24
GABPB1-201ENST00000220429 SMC5Q8IY18 1101 aa16.58■□□□□ 0.24
GABPB1-201ENST00000220429 CEP170BQ9Y4F5 1589 aaPredicted RBP16.57■□□□□ 0.24
GABPB1-201ENST00000220429 ZBTB7CA1YPR0 619 aa16.57■□□□□ 0.24
GABPB1-201ENST00000220429 GEMIN8Q9NWZ8 242 aaKnown RBP16.57■□□□□ 0.24
GABPB1-201ENST00000220429 ZBTB9Q96C00 473 aa16.57■□□□□ 0.24
GABPB1-201ENST00000220429 PIK3C2AO00443 1686 aa16.56■□□□□ 0.24
GABPB1-201ENST00000220429 C8orf58Q8NAV2 365 aa16.56■□□□□ 0.24
GABPB1-201ENST00000220429 NGDNQ8NEJ9 315 aaKnown RBP16.56■□□□□ 0.24
GABPB1-201ENST00000220429 CHMP4CQ96CF2 233 aa16.56■□□□□ 0.24
GABPB1-201ENST00000220429 KCNA6P17658 529 aa16.56■□□□□ 0.24
GABPB1-201ENST00000220429 TWISTNBQ3B726 338 aaPredicted RBP16.56■□□□□ 0.24
GABPB1-201ENST00000220429 MAP3K19Q56UN5 1328 aa16.55■□□□□ 0.24
GABPB1-201ENST00000220429 MYCNP04198 464 aaPredicted RBP16.55■□□□□ 0.24
GABPB1-201ENST00000220429 CALCOCO1Q9P1Z2 691 aa16.55■□□□□ 0.24
GABPB1-201ENST00000220429 ARHGAP45Q92619 1136 aa16.54■□□□□ 0.24
GABPB1-201ENST00000220429 PIK3R4Q99570 1358 aa16.54■□□□□ 0.24
GABPB1-201ENST00000220429 HAP1P54257 671 aaPredicted RBP16.54■□□□□ 0.24
GABPB1-201ENST00000220429 ZSCAN23Q3MJ62 389 aa16.54■□□□□ 0.24
GABPB1-201ENST00000220429 ANKRD7Q92527 254 aa16.54■□□□□ 0.24
GABPB1-201ENST00000220429 AXDND1Q5T1B0 1012 aaPredicted RBP16.54■□□□□ 0.24
GABPB1-201ENST00000220429 MARF1Q9Y4F3 1742 aaKnown RBP16.53■□□□□ 0.24
GABPB1-201ENST00000220429 MFAP1P55081 439 aaKnown RBP16.53■□□□□ 0.24
GABPB1-201ENST00000220429 ANKARQ7Z5J8 1434 aa16.52■□□□□ 0.24
GABPB1-201ENST00000220429 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.52■□□□□ 0.24
GABPB1-201ENST00000220429 PRIM1P49642 420 aaKnown RBP16.52■□□□□ 0.24
GABPB1-201ENST00000220429 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.52■□□□□ 0.243e-6■■■■□ 21.7
GABPB1-201ENST00000220429 SBNO1A3KN83 1393 aa16.52■□□□□ 0.23
GABPB1-201ENST00000220429 ARHGEF10O15013 1369 aa16.52■□□□□ 0.23
GABPB1-201ENST00000220429 FLT4P35916 1363 aa16.52■□□□□ 0.23
GABPB1-201ENST00000220429 PTMAP06454 111 aaKnown RBP16.52■□□□□ 0.23
GABPB1-201ENST00000220429 ZBTB7BO15156 539 aaPredicted RBP16.51■□□□□ 0.23
GABPB1-201ENST00000220429 CAVIN1Q6NZI2 390 aaKnown RBP16.51■□□□□ 0.23
GABPB1-201ENST00000220429 SNX21Q969T3 373 aa16.51■□□□□ 0.23
GABPB1-201ENST00000220429 CHD2O14647 1828 aaKnown RBP16.51■□□□□ 0.23
GABPB1-201ENST00000220429 ABCC4O15439 1325 aa16.51■□□□□ 0.23
GABPB1-201ENST00000220429 MCM10Q7L590 875 aa16.51■□□□□ 0.23
GABPB1-201ENST00000220429 EFCC1Q9HA90 598 aa16.51■□□□□ 0.23
GABPB1-201ENST00000220429 CLEC17AQ6ZS10 378 aa16.5■□□□□ 0.23
GABPB1-201ENST00000220429 ZNF622Q969S3 477 aaKnown RBP eCLIP16.5■□□□□ 0.234e-7■■□□□ 12.1
GABPB1-201ENST00000220429 NOLC1Q14978 699 aaKnown RBP eCLIP16.5■□□□□ 0.23
GABPB1-201ENST00000220429 TERF2Q15554 542 aa16.5■□□□□ 0.23
GABPB1-201ENST00000220429 PIBF1Q8WXW3 757 aa16.5■□□□□ 0.23
GABPB1-201ENST00000220429 CHL1O00533 1208 aa16.49■□□□□ 0.23
GABPB1-201ENST00000220429 KRT24Q2M2I5 525 aa16.48■□□□□ 0.23
GABPB1-201ENST00000220429 KDRP35968 1356 aa16.48■□□□□ 0.23
GABPB1-201ENST00000220429 USP54Q70EL1 1684 aa16.48■□□□□ 0.23
GABPB1-201ENST00000220429 NLRP6P59044 892 aa16.48■□□□□ 0.23
GABPB1-201ENST00000220429 ZNF142P52746 1687 aaPredicted RBP16.48■□□□□ 0.23
GABPB1-201ENST00000220429 BAG4O95429 457 aaKnown RBP16.47■□□□□ 0.23
GABPB1-201ENST00000220429 SSFA2P28290 1259 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms