Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 LINC00896-202ENST00000609602 2128 ntBASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 AL499627.1-201ENST00000569373 2188 ntBASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 AC004911.1-201ENST00000416316 871 ntBASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 DUSP5P2-201ENST00000426873 1033 ntBASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TMEM56-RWDD3S4R434 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 AC068587.9-201ENST00000641814 219 ntBASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TMEM56-RWDD3S4R434 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 AC134043.2-201ENST00000624206 2238 ntBASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 AC120498.8-201ENST00000614275 531 ntBASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TMEM56-RWDD3S4R434 AC112777.1-201ENST00000540175 1423 ntBASIC15.34■□□□□ 0.05
TMEM56-RWDD3S4R434 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TMEM56-RWDD3S4R434 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TMEM56-RWDD3S4R434 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC15.34■□□□□ 0.05
TMEM56-RWDD3S4R434 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC15.34■□□□□ 0.05
TMEM56-RWDD3S4R434 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TMEM56-RWDD3S4R434 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms