Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 Y_RNA.75-201ENST00000362927 97 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 RNU6-824P-201ENST00000363724 104 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 SNORA33.1-201ENST00000364957 130 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 RNY3P1-201ENST00000365085 102 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 RNU6-211P-201ENST00000384047 107 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 Y_RNA.435-201ENST00000384095 112 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 RNU6-972P-201ENST00000391208 107 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 U3.27-201ENST00000391237 200 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 RNU2-38P-201ENST00000410856 79 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 MTND3P22-201ENST00000510932 243 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 RNU6-523P-201ENST00000516304 54 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.48□□□□□ -2.49
COL7A1Q02388 MIR8062-201ENST00000621515 85 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 U6.96-201ENST00000636425 70 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 Y_RNA.349-201ENST00000365406 102 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 SNORD58A-201ENST00000383875 65 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 MT-TL1-201ENST00000386347 75 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 RNU6-400P-201ENST00000391173 106 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 AL691482.2-201ENST00000457453 84 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 RNU6-168P-201ENST00000516189 101 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 MIR548Z-201ENST00000584743 97 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 AC104996.3-201ENST00000590718 94 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 U2.7-201ENST00000619197 100 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 AL035470.1-201ENST00000622571 220 ntBASIC-0.48□□□□□ -2.49
COL7A1Q02388 Y_RNA.59-201ENST00000362828 102 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 Y_RNA.197-201ENST00000364004 102 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 Y_RNA.619-201ENST00000410951 90 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 Y_RNA.793-201ENST00000411222 111 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC-0.49□□□□□ -2.49
COL7A1Q02388 RNU7-164P-201ENST00000459221 62 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 MTND1P19-201ENST00000511780 315 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 RNU6-1143P-201ENST00000516125 104 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 RNU6-1061P-201ENST00000516530 99 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 Y_RNA.721-201ENST00000517207 102 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 MIR4777-201ENST00000583710 86 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 U7.2-201ENST00000607576 63 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 U4.5-201ENST00000617137 123 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-0.49□□□□□ -2.49
COL7A1Q02388 MIR3688-2-201ENST00000636963 87 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 SNORD45.1-201ENST00000363181 77 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 Y_RNA.134-201ENST00000363435 105 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 snoU2_19.4-201ENST00000364329 80 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 RNU6-290P-201ENST00000365212 101 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 RNU6-1227P-201ENST00000383981 107 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 AC020661.2-201ENST00000560114 134 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 AC103591.3-201ENST00000608684 209 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 AC012531.4-201ENST00000616509 177 ntBASIC-0.49□□□□□ -2.49
COL7A1Q02388 Y_RNA.11-201ENST00000362375 109 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 RNU6-770P-201ENST00000363929 105 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 Y_RNA.252-201ENST00000364556 101 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 SNORD37.2-201ENST00000391075 66 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 SNORA75.5-201ENST00000391291 81 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.5□□□□□ -2.49
COL7A1Q02388 Y_RNA.693-201ENST00000516641 110 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 RNU6-537P-201ENST00000517277 103 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 MIR3908-201ENST00000579798 126 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 AL160413.1-201ENST00000622780 310 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 MIR6844-201ENST00000637122 62 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 MIRLET7A3-201ENST00000362116 74 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 SNORD60.1-201ENST00000362451 73 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 RNU6-247P-201ENST00000362636 107 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 RNU6-649P-201ENST00000384463 107 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 MIR581-201ENST00000384895 96 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-0.5□□□□□ -2.49
COL7A1Q02388 SNORD90-201ENST00000391145 111 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 RNU6-918P-201ENST00000391219 106 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 RNU6-1135P-201ENST00000411083 103 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 RNU6-956P-201ENST00000458868 103 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 RNU6-506P-201ENST00000516553 94 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 RNU6-635P-201ENST00000516651 102 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 MIR5701-3-201ENST00000578890 82 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 MIR548W-201ENST00000581970 74 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 MIR5701-1-201ENST00000585138 82 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 MIR5701-2-201ENST00000615634 82 ntBASIC-0.5□□□□□ -2.49
COL7A1Q02388 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC-0.5□□□□□ -2.49
COL7A1Q02388 RNU6-766P-201ENST00000362478 107 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 Y_RNA.98-201ENST00000363109 102 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 Y_RNA.276-201ENST00000364732 109 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 MIR548C-201ENST00000384815 97 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 MIR548N-201ENST00000408742 75 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 RNU4-14P-201ENST00000410858 122 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 RNU6-1137P-201ENST00000517073 99 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 RNU6-988P-201ENST00000519081 107 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 MIR5009-201ENST00000578736 100 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 AC072026.1-201ENST00000605023 201 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 U2.14-201ENST00000615943 113 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 Y_RNA.79-201ENST00000362992 113 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 RNU6-912P-201ENST00000363800 104 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 SNORD74.6-201ENST00000364796 70 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 RNU6-1081P-201ENST00000384537 107 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 RNU6-310P-201ENST00000384655 107 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 RNU6-995P-201ENST00000391244 107 ntBASIC-0.51□□□□□ -2.49
COL7A1Q02388 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.51□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms