Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC114801.3-201ENST00000510231 177 ntBASIC0.85□□□□□ -2.27
MSX2P35548 RNA5SP268-201ENST00000516828 124 ntBASIC0.85□□□□□ -2.27
MSX2P35548 MIR4460-201ENST00000577862 86 ntBASIC0.85□□□□□ -2.27
MSX2P35548 MIR7107-201ENST00000611489 80 ntBASIC0.85□□□□□ -2.27
MSX2P35548 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
MSX2P35548 SNORD115-31-201ENST00000365318 82 ntBASIC0.84□□□□□ -2.27
MSX2P35548 MIR598-201ENST00000384868 97 ntBASIC0.84□□□□□ -2.27
MSX2P35548 RNU6-871P-201ENST00000516122 100 ntBASIC0.84□□□□□ -2.27
MSX2P35548 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.84□□□□□ -2.27
MSX2P35548 PVT1_3.1-201ENST00000620853 95 ntBASIC0.84□□□□□ -2.27
MSX2P35548 RNU6-1039P-201ENST00000383931 107 ntBASIC0.83□□□□□ -2.28
MSX2P35548 MIR154-201ENST00000385243 84 ntBASIC0.83□□□□□ -2.28
MSX2P35548 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.83□□□□□ -2.28
MSX2P35548 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.83□□□□□ -2.28
MSX2P35548 PSMC1P5-201ENST00000512850 177 ntBASIC0.83□□□□□ -2.28
MSX2P35548 SNORD114-26-201ENST00000363543 72 ntBASIC0.82□□□□□ -2.28
MSX2P35548 RNU6-540P-201ENST00000384622 101 ntBASIC0.82□□□□□ -2.28
MSX2P35548 AL691482.2-201ENST00000457453 84 ntBASIC0.82□□□□□ -2.28
MSX2P35548 AC069503.3-201ENST00000618674 145 ntBASIC0.82□□□□□ -2.28
MSX2P35548 SNORD45.1-201ENST00000363181 77 ntBASIC0.8□□□□□ -2.28
MSX2P35548 SNORD114-2-201ENST00000363953 78 ntBASIC0.8□□□□□ -2.28
MSX2P35548 SNORD115-22-201ENST00000364456 82 ntBASIC0.8□□□□□ -2.28
MSX2P35548 RNA5SP517-201ENST00000364724 117 ntBASIC0.8□□□□□ -2.28
MSX2P35548 MIR146A-201ENST00000385201 99 ntBASIC0.8□□□□□ -2.28
MSX2P35548 RNA5SP436-201ENST00000516020 115 ntBASIC0.8□□□□□ -2.28
MSX2P35548 RNU6-539P-201ENST00000516665 103 ntBASIC0.8□□□□□ -2.28
MSX2P35548 RNU5B-6P-201ENST00000516765 68 ntBASIC0.8□□□□□ -2.28
MSX2P35548 AC018659.1-201ENST00000551083 169 ntBASIC0.8□□□□□ -2.28
MSX2P35548 MIR4698-201ENST00000577795 80 ntBASIC0.8□□□□□ -2.28
MSX2P35548 MIR4653-201ENST00000585107 83 ntBASIC0.8□□□□□ -2.28
MSX2P35548 MIR6509-201ENST00000614603 85 ntBASIC0.8□□□□□ -2.28
MSX2P35548 MIR6779-201ENST00000617283 64 ntBASIC0.8□□□□□ -2.28
MSX2P35548 SNORD45A-201ENST00000384512 84 ntBASIC0.79□□□□□ -2.28
MSX2P35548 MIR140-201ENST00000385282 100 ntBASIC0.79□□□□□ -2.28
MSX2P35548 RNU6-604P-201ENST00000390917 100 ntBASIC0.79□□□□□ -2.28
MSX2P35548 SNORA40.17-201ENST00000517256 115 ntBASIC0.79□□□□□ -2.28
MSX2P35548 AC073869.9-201ENST00000641610 120 ntBASIC0.79□□□□□ -2.28
MSX2P35548 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.79□□□□□ -2.28
MSX2P35548 RNA5SP325-201ENST00000363756 130 ntBASIC0.78□□□□□ -2.28
MSX2P35548 SNORA36.2-201ENST00000384004 127 ntBASIC0.78□□□□□ -2.28
MSX2P35548 RNU6-110P-201ENST00000384508 104 ntBASIC0.78□□□□□ -2.28
MSX2P35548 MIR203A-201ENST00000384836 110 ntBASIC0.78□□□□□ -2.28
MSX2P35548 RNU6-351P-201ENST00000516097 100 ntBASIC0.78□□□□□ -2.28
MSX2P35548 MIR8053-201ENST00000613344 75 ntBASIC0.78□□□□□ -2.28
MSX2P35548 RNU1-29P-201ENST00000606574 126 ntBASIC0.77□□□□□ -2.29
MSX2P35548 SNORA70.25-201ENST00000612741 95 ntBASIC0.77□□□□□ -2.29
MSX2P35548 Y_RNA.205-201ENST00000364128 113 ntBASIC0.76□□□□□ -2.29
MSX2P35548 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.76□□□□□ -2.29
MSX2P35548 MIR5000-201ENST00000577717 103 ntBASIC0.76□□□□□ -2.29
MSX2P35548 MIR4752-201ENST00000579672 72 ntBASIC0.76□□□□□ -2.29
MSX2P35548 MIR3657-201ENST00000584818 117 ntBASIC0.76□□□□□ -2.29
MSX2P35548 MIR373-201ENST00000362273 69 ntBASIC0.75□□□□□ -2.29
MSX2P35548 RNU6-990P-201ENST00000364385 104 ntBASIC0.75□□□□□ -2.29
MSX2P35548 RNU6-260P-201ENST00000384092 107 ntBASIC0.75□□□□□ -2.29
MSX2P35548 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.75□□□□□ -2.29
MSX2P35548 AC006210.1-201ENST00000424882 111 ntBASIC0.75□□□□□ -2.29
MSX2P35548 RNU6-881P-201ENST00000516813 102 ntBASIC0.75□□□□□ -2.29
MSX2P35548 SNORD113.1-201ENST00000363280 73 ntBASIC0.74□□□□□ -2.29
MSX2P35548 SNORD118-201ENST00000363593 134 ntBASIC0.74□□□□□ -2.29
MSX2P35548 RNU6-649P-201ENST00000384463 107 ntBASIC0.74□□□□□ -2.29
MSX2P35548 RNU6-788P-201ENST00000390967 104 ntBASIC0.74□□□□□ -2.29
MSX2P35548 SNORD110-201ENST00000408189 75 ntBASIC0.74□□□□□ -2.29
MSX2P35548 MIR3973-201ENST00000579824 107 ntBASIC0.74□□□□□ -2.29
MSX2P35548 SNORA25.18-201ENST00000607153 114 ntBASIC0.74□□□□□ -2.29
MSX2P35548 MIR6857-201ENST00000613267 93 ntBASIC0.74□□□□□ -2.29
MSX2P35548 AC092634.7-201ENST00000621022 103 ntBASIC0.74□□□□□ -2.29
MSX2P35548 RNU6-590P-201ENST00000365039 107 ntBASIC0.73□□□□□ -2.29
MSX2P35548 RNU6-663P-201ENST00000391105 106 ntBASIC0.73□□□□□ -2.29
MSX2P35548 AC069271.1-201ENST00000445577 156 ntBASIC0.73□□□□□ -2.29
MSX2P35548 CYP3A137P-201ENST00000562436 69 ntBASIC0.73□□□□□ -2.29
MSX2P35548 MIR548AE1-201ENST00000583292 70 ntBASIC0.73□□□□□ -2.29
MSX2P35548 SNORA2.1-201ENST00000363089 137 ntBASIC0.72□□□□□ -2.29
MSX2P35548 SNORD114-4-201ENST00000363962 75 ntBASIC0.72□□□□□ -2.29
MSX2P35548 Y_RNA.386-201ENST00000383913 105 ntBASIC0.72□□□□□ -2.29
MSX2P35548 SNORD116-24-201ENST00000384549 92 ntBASIC0.72□□□□□ -2.29
MSX2P35548 MIR532-201ENST00000385025 91 ntBASIC0.72□□□□□ -2.29
MSX2P35548 SNORD30.1-201ENST00000391309 70 ntBASIC0.72□□□□□ -2.29
MSX2P35548 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.72□□□□□ -2.29
MSX2P35548 U6.111-201ENST00000636093 83 ntBASIC0.72□□□□□ -2.29
MSX2P35548 Y_RNA.407-201ENST00000383986 113 ntBASIC0.71□□□□□ -2.3
MSX2P35548 RNU6-895P-201ENST00000384125 103 ntBASIC0.71□□□□□ -2.3
MSX2P35548 SNORA40.8-201ENST00000411034 126 ntBASIC0.71□□□□□ -2.3
MSX2P35548 RNU6-982P-201ENST00000516216 102 ntBASIC0.71□□□□□ -2.3
MSX2P35548 MIR4473-201ENST00000583731 91 ntBASIC0.71□□□□□ -2.3
MSX2P35548 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.7□□□□□ -2.3
MSX2P35548 MIR216A-201ENST00000385063 110 ntBASIC0.7□□□□□ -2.3
MSX2P35548 MIR652-201ENST00000385278 98 ntBASIC0.7□□□□□ -2.3
MSX2P35548 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
MSX2P35548 HMGN2P22-201ENST00000427588 175 ntBASIC0.7□□□□□ -2.3
MSX2P35548 RN7SL793P-201ENST00000583259 296 ntBASIC0.7□□□□□ -2.3
MSX2P35548 RNU6-1216P-201ENST00000362590 107 ntBASIC0.69□□□□□ -2.3
MSX2P35548 SCARNA17.3-201ENST00000516381 125 ntBASIC0.69□□□□□ -2.3
MSX2P35548 MIR5706-201ENST00000579841 80 ntBASIC0.69□□□□□ -2.3
MSX2P35548 AL590095.2-201ENST00000604136 117 ntBASIC0.69□□□□□ -2.3
MSX2P35548 MIR6866-201ENST00000638146 69 ntBASIC0.69□□□□□ -2.3
MSX2P35548 RNU6-800P-201ENST00000384473 103 ntBASIC0.68□□□□□ -2.3
MSX2P35548 MIR518A1-201ENST00000385068 85 ntBASIC0.68□□□□□ -2.3
MSX2P35548 RNU4-54P-201ENST00000516428 129 ntBASIC0.68□□□□□ -2.3
MSX2P35548 RNA5SP147-201ENST00000516493 109 ntBASIC0.68□□□□□ -2.3
MSX2P35548 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 203.9 ms