Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 RNU6-752P-201ENST00000516376 102 ntBASIC1.97□□□□□ -2.09
USP46P62068 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
USP46P62068 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
USP46P62068 SNORD113.1-201ENST00000363280 73 ntBASIC1.96□□□□□ -2.1
USP46P62068 Y_RNA.443-201ENST00000384135 111 ntBASIC1.96□□□□□ -2.1
USP46P62068 RNU6-548P-201ENST00000517083 115 ntBASIC1.96□□□□□ -2.1
USP46P62068 AL353997.5-201ENST00000618886 171 ntBASIC1.96□□□□□ -2.1
USP46P62068 RNU6-1216P-201ENST00000362590 107 ntBASIC1.95□□□□□ -2.1
USP46P62068 RNU6-471P-201ENST00000383944 106 ntBASIC1.95□□□□□ -2.1
USP46P62068 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.95□□□□□ -2.1
USP46P62068 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.95□□□□□ -2.1
USP46P62068 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
USP46P62068 SNORA25.4-201ENST00000363666 124 ntBASIC1.94□□□□□ -2.1
USP46P62068 RNA5SP117-201ENST00000365294 118 ntBASIC1.94□□□□□ -2.1
USP46P62068 AC067863.3-201ENST00000624172 122 ntBASIC1.94□□□□□ -2.1
USP46P62068 MIR617-201ENST00000385030 97 ntBASIC1.93□□□□□ -2.1
USP46P62068 MIR644A-201ENST00000385262 94 ntBASIC1.93□□□□□ -2.1
USP46P62068 MIR216B-201ENST00000390186 82 ntBASIC1.93□□□□□ -2.1
USP46P62068 SNORD75.2-201ENST00000408784 58 ntBASIC1.93□□□□□ -2.1
USP46P62068 NAMPTP3-201ENST00000569273 224 ntBASIC1.93□□□□□ -2.1
USP46P62068 MIR3122-201ENST00000577243 73 ntBASIC1.93□□□□□ -2.1
USP46P62068 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
USP46P62068 SNORD89-201ENST00000390981 114 ntBASIC1.92□□□□□ -2.1
USP46P62068 SNORD12-201ENST00000391002 90 ntBASIC1.92□□□□□ -2.1
USP46P62068 AC002429.1-201ENST00000437672 148 ntBASIC1.92□□□□□ -2.1
USP46P62068 RNU1-123P-201ENST00000458950 160 ntBASIC1.92□□□□□ -2.1
USP46P62068 MIR8081-201ENST00000611533 95 ntBASIC1.92□□□□□ -2.1
USP46P62068 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.92□□□□□ -2.1
USP46P62068 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.91□□□□□ -2.1
USP46P62068 AC084768.2-201ENST00000622736 221 ntBASIC1.91□□□□□ -2.1
USP46P62068 RNU1-17P-201ENST00000363022 152 ntBASIC1.9□□□□□ -2.11
USP46P62068 MIR9-2-201ENST00000384838 87 ntBASIC1.9□□□□□ -2.11
USP46P62068 MIR519E-201ENST00000385075 84 ntBASIC1.9□□□□□ -2.11
USP46P62068 AL603825.1-201ENST00000438481 80 ntBASIC1.9□□□□□ -2.11
USP46P62068 RNU6-469P-201ENST00000516253 101 ntBASIC1.9□□□□□ -2.11
USP46P62068 MIR6509-201ENST00000614603 85 ntBASIC1.9□□□□□ -2.11
USP46P62068 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.9□□□□□ -2.11
USP46P62068 MIR203A-201ENST00000384836 110 ntBASIC1.89□□□□□ -2.11
USP46P62068 AC002350.1-201ENST00000490759 375 ntBASIC1.89□□□□□ -2.11
USP46P62068 RNA5SP458-201ENST00000516188 119 ntBASIC1.89□□□□□ -2.11
USP46P62068 RNU6-495P-201ENST00000362995 107 ntBASIC1.88□□□□□ -2.11
USP46P62068 SNORD116-24-201ENST00000384549 92 ntBASIC1.88□□□□□ -2.11
USP46P62068 MIR548L-201ENST00000408303 86 ntBASIC1.88□□□□□ -2.11
USP46P62068 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.88□□□□□ -2.11
USP46P62068 SNORA16.1-201ENST00000364597 132 ntBASIC1.87□□□□□ -2.11
USP46P62068 RNU6-54P-201ENST00000365563 107 ntBASIC1.87□□□□□ -2.11
USP46P62068 RNU6-1039P-201ENST00000383931 107 ntBASIC1.87□□□□□ -2.11
USP46P62068 RNU6-982P-201ENST00000516216 102 ntBASIC1.87□□□□□ -2.11
USP46P62068 SNORA25-201ENST00000384384 134 ntBASIC1.86□□□□□ -2.11
USP46P62068 RNU7-24P-201ENST00000458867 62 ntBASIC1.86□□□□□ -2.11
USP46P62068 MIR548O2-201ENST00000616090 70 ntBASIC1.86□□□□□ -2.11
USP46P62068 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.86□□□□□ -2.11
USP46P62068 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
USP46P62068 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
USP46P62068 RNA5SP327-201ENST00000362494 101 ntBASIC1.85□□□□□ -2.11
USP46P62068 SNORA17.3-201ENST00000391159 129 ntBASIC1.85□□□□□ -2.11
USP46P62068 MIR4285-201ENST00000581001 85 ntBASIC1.85□□□□□ -2.11
USP46P62068 AC244669.1-204ENST00000621564 178 ntBASIC1.85□□□□□ -2.11
USP46P62068 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
USP46P62068 SNORA7.1-201ENST00000363750 139 ntBASIC1.84□□□□□ -2.11
USP46P62068 RNU6V-201ENST00000384105 107 ntBASIC1.84□□□□□ -2.11
USP46P62068 SNORD13-201ENST00000459299 104 ntBASIC1.84□□□□□ -2.11
USP46P62068 RNU6-135P-201ENST00000516769 101 ntBASIC1.84□□□□□ -2.11
USP46P62068 MIR4419B-201ENST00000577260 68 ntBASIC1.84□□□□□ -2.11
USP46P62068 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.84□□□□□ -2.11
USP46P62068 RNA5SP190-201ENST00000365222 118 ntBASIC1.83□□□□□ -2.12
USP46P62068 SNORD105-201ENST00000386910 85 ntBASIC1.83□□□□□ -2.12
USP46P62068 SNORA25.15-201ENST00000516487 89 ntBASIC1.83□□□□□ -2.12
USP46P62068 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.83□□□□□ -2.12
USP46P62068 MIR4639-201ENST00000584938 69 ntBASIC1.83□□□□□ -2.12
USP46P62068 RNU7-74P-201ENST00000459104 62 ntBASIC1.82□□□□□ -2.12
USP46P62068 RNU6-1110P-201ENST00000516462 101 ntBASIC1.82□□□□□ -2.12
USP46P62068 AL109933.3-201ENST00000619095 188 ntBASIC1.82□□□□□ -2.12
USP46P62068 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
USP46P62068 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.82□□□□□ -2.12
USP46P62068 SNORD28-201ENST00000384706 75 ntBASIC1.81□□□□□ -2.12
USP46P62068 RNA5SP363-201ENST00000365072 115 ntBASIC1.8□□□□□ -2.12
USP46P62068 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
USP46P62068 FABP5P4-201ENST00000437203 171 ntBASIC1.8□□□□□ -2.12
USP46P62068 MTND4LP1-201ENST00000446263 157 ntBASIC1.8□□□□□ -2.12
USP46P62068 Y_RNA.676-201ENST00000516393 96 ntBASIC1.8□□□□□ -2.12
USP46P62068 RNU6-668P-201ENST00000364180 107 ntBASIC1.79□□□□□ -2.12
USP46P62068 Y_RNA.338-201ENST00000365320 114 ntBASIC1.79□□□□□ -2.12
USP46P62068 RNU6-716P-201ENST00000365621 103 ntBASIC1.79□□□□□ -2.12
USP46P62068 MIR4511-201ENST00000582784 87 ntBASIC1.79□□□□□ -2.12
USP46P62068 MIR4460-201ENST00000577862 86 ntBASIC1.78□□□□□ -2.12
USP46P62068 MIR4255-201ENST00000579351 72 ntBASIC1.78□□□□□ -2.12
USP46P62068 MIR3657-201ENST00000584818 117 ntBASIC1.78□□□□□ -2.12
USP46P62068 AC103706.3-201ENST00000636297 85 ntBASIC1.78□□□□□ -2.12
USP46P62068 SNORD48-201ENST00000364953 64 ntBASIC1.77□□□□□ -2.13
USP46P62068 AC108667.1-201ENST00000428618 249 ntBASIC1.77□□□□□ -2.13
USP46P62068 SNORD42B-201ENST00000458893 67 ntBASIC1.77□□□□□ -2.13
USP46P62068 U7.7-201ENST00000459276 60 ntBASIC1.77□□□□□ -2.13
USP46P62068 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
USP46P62068 AC069503.3-201ENST00000618674 145 ntBASIC1.76□□□□□ -2.13
USP46P62068 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.75□□□□□ -2.13
USP46P62068 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
USP46P62068 SNORD18A-201ENST00000363753 72 ntBASIC1.75□□□□□ -2.13
USP46P62068 RNU6-1187P-201ENST00000364771 110 ntBASIC1.75□□□□□ -2.13
USP46P62068 RNU6-260P-201ENST00000384092 107 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 196.3 ms