Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC090625.1-201ENST00000357130 210 ntBASIC0.32□□□□□ -2.36
TNFRSF4P43489 SNORA63.5-201ENST00000363548 123 ntBASIC0.32□□□□□ -2.36
TNFRSF4P43489 Y_RNA.213-201ENST00000364178 111 ntBASIC0.32□□□□□ -2.36
TNFRSF4P43489 RNU6-865P-201ENST00000364772 107 ntBASIC0.32□□□□□ -2.36
TNFRSF4P43489 RNY1P2-201ENST00000364820 117 ntBASIC0.32□□□□□ -2.36
TNFRSF4P43489 Y_RNA.343-201ENST00000365354 112 ntBASIC0.32□□□□□ -2.36
TNFRSF4P43489 MIR518A1-201ENST00000385068 85 ntBASIC0.32□□□□□ -2.36
TNFRSF4P43489 RNU7-2P-201ENST00000516096 62 ntBASIC0.32□□□□□ -2.36
TNFRSF4P43489 RNU7-200P-201ENST00000516105 62 ntBASIC0.32□□□□□ -2.36
TNFRSF4P43489 MIR3163-201ENST00000581592 73 ntBASIC0.32□□□□□ -2.36
TNFRSF4P43489 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.32□□□□□ -2.36
TNFRSF4P43489 SUMO1P3-201ENST00000439961 304 ntBASIC0.31□□□□□ -2.36
TNFRSF4P43489 MIR4500-201ENST00000579472 76 ntBASIC0.31□□□□□ -2.36
TNFRSF4P43489 MIR4514-201ENST00000581410 57 ntBASIC0.31□□□□□ -2.36
TNFRSF4P43489 AC023932.2-201ENST00000603176 175 ntBASIC0.31□□□□□ -2.36
TNFRSF4P43489 Y_RNA.98-201ENST00000363109 102 ntBASIC0.3□□□□□ -2.36
TNFRSF4P43489 RNU6-209P-201ENST00000384118 107 ntBASIC0.3□□□□□ -2.36
TNFRSF4P43489 RNU6-429P-201ENST00000384582 108 ntBASIC0.3□□□□□ -2.36
TNFRSF4P43489 AL158147.1-201ENST00000443970 75 ntBASIC0.3□□□□□ -2.36
TNFRSF4P43489 RNU6-346P-201ENST00000516288 111 ntBASIC0.3□□□□□ -2.36
TNFRSF4P43489 RNA5SP134-201ENST00000516492 96 ntBASIC0.3□□□□□ -2.36
TNFRSF4P43489 RNA5SP268-201ENST00000516828 124 ntBASIC0.3□□□□□ -2.36
TNFRSF4P43489 RNU6-1212P-201ENST00000517023 104 ntBASIC0.3□□□□□ -2.36
TNFRSF4P43489 TUG1_4.1-201ENST00000619464 181 ntBASIC0.3□□□□□ -2.36
TNFRSF4P43489 AP001362.1-201ENST00000625165 124 ntBASIC0.3□□□□□ -2.36
TNFRSF4P43489 RNU6-235P-201ENST00000362644 107 ntBASIC0.29□□□□□ -2.36
TNFRSF4P43489 RNA5SP257-201ENST00000363023 116 ntBASIC0.29□□□□□ -2.36
TNFRSF4P43489 SNORA36.1-201ENST00000363424 132 ntBASIC0.29□□□□□ -2.36
TNFRSF4P43489 RNA5SP245-201ENST00000364239 121 ntBASIC0.29□□□□□ -2.36
TNFRSF4P43489 Y_RNA.528-201ENST00000384575 108 ntBASIC0.29□□□□□ -2.36
TNFRSF4P43489 RNU6-1307P-201ENST00000391012 103 ntBASIC0.29□□□□□ -2.36
TNFRSF4P43489 RNA5SP136-201ENST00000410906 107 ntBASIC0.29□□□□□ -2.36
TNFRSF4P43489 RNA5SP227-201ENST00000516184 113 ntBASIC0.29□□□□□ -2.36
TNFRSF4P43489 RNU6-781P-201ENST00000516377 101 ntBASIC0.29□□□□□ -2.36
TNFRSF4P43489 RNU6-1061P-201ENST00000516530 99 ntBASIC0.29□□□□□ -2.36
TNFRSF4P43489 RNU6-255P-201ENST00000516957 105 ntBASIC0.29□□□□□ -2.36
TNFRSF4P43489 MIR548H5-201ENST00000580314 60 ntBASIC0.29□□□□□ -2.36
TNFRSF4P43489 MIR4639-201ENST00000584938 69 ntBASIC0.29□□□□□ -2.36
TNFRSF4P43489 Y_RNA.56-201ENST00000362798 112 ntBASIC0.28□□□□□ -2.36
TNFRSF4P43489 SNORD118-201ENST00000363593 134 ntBASIC0.28□□□□□ -2.36
TNFRSF4P43489 Y_RNA.198-201ENST00000364013 98 ntBASIC0.28□□□□□ -2.36
TNFRSF4P43489 Y_RNA.328-201ENST00000365208 113 ntBASIC0.28□□□□□ -2.36
TNFRSF4P43489 SNORD28-201ENST00000384706 75 ntBASIC0.28□□□□□ -2.36
TNFRSF4P43489 MT-TI-201ENST00000387365 69 ntBASIC0.28□□□□□ -2.36
TNFRSF4P43489 SNORA40-201ENST00000388090 126 ntBASIC0.28□□□□□ -2.36
TNFRSF4P43489 MTND4LP9-201ENST00000427694 174 ntBASIC0.28□□□□□ -2.36
TNFRSF4P43489 SCARNA16.5-201ENST00000517114 183 ntBASIC0.28□□□□□ -2.36
TNFRSF4P43489 RNU7-10P-201ENST00000607194 63 ntBASIC0.28□□□□□ -2.36
TNFRSF4P43489 AC087741.2-201ENST00000619415 172 ntBASIC0.28□□□□□ -2.36
TNFRSF4P43489 AC244669.1-204ENST00000621564 178 ntBASIC0.28□□□□□ -2.36
TNFRSF4P43489 MIR103A1-201ENST00000362165 78 ntBASIC0.27□□□□□ -2.37
TNFRSF4P43489 Y_RNA.49-201ENST00000362714 112 ntBASIC0.27□□□□□ -2.37
TNFRSF4P43489 Y_RNA.280-201ENST00000364765 112 ntBASIC0.27□□□□□ -2.37
TNFRSF4P43489 SNORD115-35-201ENST00000365122 82 ntBASIC0.27□□□□□ -2.37
TNFRSF4P43489 RNU6-1327P-201ENST00000365302 105 ntBASIC0.27□□□□□ -2.37
TNFRSF4P43489 RNA5SP63-201ENST00000391225 112 ntBASIC0.27□□□□□ -2.37
TNFRSF4P43489 BX276092.1-201ENST00000427368 251 ntBASIC0.27□□□□□ -2.37
TNFRSF4P43489 RNA5SP47-201ENST00000517230 109 ntBASIC0.27□□□□□ -2.37
TNFRSF4P43489 AC138869.1-201ENST00000568623 124 ntBASIC0.27□□□□□ -2.37
TNFRSF4P43489 MIR7107-201ENST00000611489 80 ntBASIC0.27□□□□□ -2.37
TNFRSF4P43489 MIR376B-201ENST00000614515 100 ntBASIC0.27□□□□□ -2.37
TNFRSF4P43489 Y_RNA.127-201ENST00000363386 109 ntBASIC0.26□□□□□ -2.37
TNFRSF4P43489 SNORD115-24-201ENST00000363528 82 ntBASIC0.26□□□□□ -2.37
TNFRSF4P43489 RNY1P5-201ENST00000383890 115 ntBASIC0.26□□□□□ -2.37
TNFRSF4P43489 Y_RNA.568-201ENST00000384742 113 ntBASIC0.26□□□□□ -2.37
TNFRSF4P43489 MIR635-201ENST00000384830 98 ntBASIC0.26□□□□□ -2.37
TNFRSF4P43489 MIR548L-201ENST00000408303 86 ntBASIC0.26□□□□□ -2.37
TNFRSF4P43489 RNU6-257P-201ENST00000410238 98 ntBASIC0.26□□□□□ -2.37
TNFRSF4P43489 RNU6-1211P-201ENST00000459179 105 ntBASIC0.26□□□□□ -2.37
TNFRSF4P43489 Y_RNA.773-201ENST00000607168 90 ntBASIC0.26□□□□□ -2.37
TNFRSF4P43489 AC091304.10-201ENST00000641554 121 ntBASIC0.26□□□□□ -2.37
TNFRSF4P43489 SNORD115-19-201ENST00000363098 82 ntBASIC0.25□□□□□ -2.37
TNFRSF4P43489 SNORD44.1-201ENST00000363202 61 ntBASIC0.25□□□□□ -2.37
TNFRSF4P43489 SNORD115-18-201ENST00000363293 82 ntBASIC0.25□□□□□ -2.37
TNFRSF4P43489 SNORD115-17-201ENST00000364612 82 ntBASIC0.25□□□□□ -2.37
TNFRSF4P43489 SNORD58C-201ENST00000365223 64 ntBASIC0.25□□□□□ -2.37
TNFRSF4P43489 Y_RNA.506-201ENST00000384494 102 ntBASIC0.25□□□□□ -2.37
TNFRSF4P43489 RNU6-907P-201ENST00000390924 102 ntBASIC0.25□□□□□ -2.37
TNFRSF4P43489 RNU6-735P-201ENST00000410612 107 ntBASIC0.25□□□□□ -2.37
TNFRSF4P43489 SNRPGP12-201ENST00000449481 213 ntBASIC0.25□□□□□ -2.37
TNFRSF4P43489 Y_RNA.681-201ENST00000516445 113 ntBASIC0.25□□□□□ -2.37
TNFRSF4P43489 RNU6-521P-201ENST00000516663 105 ntBASIC0.25□□□□□ -2.37
TNFRSF4P43489 AC025166.1-201ENST00000612411 163 ntBASIC0.25□□□□□ -2.37
TNFRSF4P43489 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.25□□□□□ -2.37
TNFRSF4P43489 RNU6-1099P-201ENST00000363533 107 ntBASIC0.24□□□□□ -2.37
TNFRSF4P43489 MIR34C-201ENST00000384831 77 ntBASIC0.24□□□□□ -2.37
TNFRSF4P43489 MIR548D2-201ENST00000384955 97 ntBASIC0.24□□□□□ -2.37
TNFRSF4P43489 RNU7-104P-201ENST00000459398 79 ntBASIC0.24□□□□□ -2.37
TNFRSF4P43489 MIR6828-201ENST00000636181 60 ntBASIC0.24□□□□□ -2.37
TNFRSF4P43489 MIR1255B1-201ENST00000636325 63 ntBASIC0.24□□□□□ -2.37
TNFRSF4P43489 RNA5SP62-201ENST00000363457 110 ntBASIC0.23□□□□□ -2.37
TNFRSF4P43489 RNU4-67P-201ENST00000364569 141 ntBASIC0.23□□□□□ -2.37
TNFRSF4P43489 SNORD38.2-201ENST00000384470 69 ntBASIC0.23□□□□□ -2.37
TNFRSF4P43489 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.23□□□□□ -2.37
TNFRSF4P43489 SNORA7.5-201ENST00000410672 110 ntBASIC0.23□□□□□ -2.37
TNFRSF4P43489 AC073261.1-201ENST00000429409 121 ntBASIC0.23□□□□□ -2.37
TNFRSF4P43489 AC244505.6-201ENST00000452829 130 ntBASIC0.23□□□□□ -2.37
TNFRSF4P43489 RNU6-1234P-201ENST00000516877 103 ntBASIC0.23□□□□□ -2.37
TNFRSF4P43489 MIR2909-201ENST00000617113 69 ntBASIC0.23□□□□□ -2.37
TNFRSF4P43489 MTND5P18-201ENST00000445624 1801 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms