Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNU6-429P-201ENST00000384582 108 ntBASIC0.78□□□□□ -2.28
CCDC28AQ8IWP9 Y_RNA.649-201ENST00000459077 103 ntBASIC0.78□□□□□ -2.28
CCDC28AQ8IWP9 SNORD33.1-201ENST00000516213 88 ntBASIC0.78□□□□□ -2.28
CCDC28AQ8IWP9 RNU6-521P-201ENST00000516663 105 ntBASIC0.78□□□□□ -2.28
CCDC28AQ8IWP9 MIR4653-201ENST00000585107 83 ntBASIC0.78□□□□□ -2.28
CCDC28AQ8IWP9 MIR1255B1-201ENST00000636325 63 ntBASIC0.78□□□□□ -2.28
CCDC28AQ8IWP9 MIR101-2-201ENST00000362195 79 ntBASIC0.77□□□□□ -2.29
CCDC28AQ8IWP9 MIR18A-201ENST00000362310 71 ntBASIC0.77□□□□□ -2.29
CCDC28AQ8IWP9 Y_RNA.344-201ENST00000365381 112 ntBASIC0.77□□□□□ -2.29
CCDC28AQ8IWP9 RNU6-1117P-201ENST00000384525 104 ntBASIC0.77□□□□□ -2.29
CCDC28AQ8IWP9 Y_RNA.536-201ENST00000384621 113 ntBASIC0.77□□□□□ -2.29
CCDC28AQ8IWP9 RNU6-1307P-201ENST00000391012 103 ntBASIC0.77□□□□□ -2.29
CCDC28AQ8IWP9 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.77□□□□□ -2.29
CCDC28AQ8IWP9 MIR4769-201ENST00000584126 77 ntBASIC0.77□□□□□ -2.29
CCDC28AQ8IWP9 Y_RNA.174-201ENST00000363781 105 ntBASIC0.76□□□□□ -2.29
CCDC28AQ8IWP9 RNU4-67P-201ENST00000364569 141 ntBASIC0.76□□□□□ -2.29
CCDC28AQ8IWP9 Y_RNA.362-201ENST00000365518 110 ntBASIC0.76□□□□□ -2.29
CCDC28AQ8IWP9 Y_RNA.507-201ENST00000384500 99 ntBASIC0.76□□□□□ -2.29
CCDC28AQ8IWP9 RNU6-535P-201ENST00000384722 107 ntBASIC0.76□□□□□ -2.29
CCDC28AQ8IWP9 MIR548A3-201ENST00000385297 97 ntBASIC0.76□□□□□ -2.29
CCDC28AQ8IWP9 AC108729.3-201ENST00000513484 108 ntBASIC0.76□□□□□ -2.29
CCDC28AQ8IWP9 RNU6-62P-201ENST00000516526 102 ntBASIC0.76□□□□□ -2.29
CCDC28AQ8IWP9 MTND5P34-201ENST00000568888 325 ntBASIC0.76□□□□□ -2.29
CCDC28AQ8IWP9 MIR4679-2-201ENST00000578358 77 ntBASIC0.76□□□□□ -2.29
CCDC28AQ8IWP9 AL670379.3-201ENST00000605040 251 ntBASIC0.76□□□□□ -2.29
CCDC28AQ8IWP9 snoU13.31-201ENST00000607291 104 ntBASIC0.76□□□□□ -2.29
CCDC28AQ8IWP9 RNU6-363P-201ENST00000362895 105 ntBASIC0.75□□□□□ -2.29
CCDC28AQ8IWP9 SNORD114-2-201ENST00000363953 78 ntBASIC0.75□□□□□ -2.29
CCDC28AQ8IWP9 RNU4-38P-201ENST00000364472 129 ntBASIC0.75□□□□□ -2.29
CCDC28AQ8IWP9 SNORA36.2-201ENST00000384004 127 ntBASIC0.75□□□□□ -2.29
CCDC28AQ8IWP9 Y_RNA.563-201ENST00000384707 108 ntBASIC0.75□□□□□ -2.29
CCDC28AQ8IWP9 RNU6-291P-201ENST00000384720 107 ntBASIC0.75□□□□□ -2.29
CCDC28AQ8IWP9 RNU6-789P-201ENST00000517105 102 ntBASIC0.75□□□□□ -2.29
CCDC28AQ8IWP9 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.75□□□□□ -2.29
CCDC28AQ8IWP9 AC007012.1-201ENST00000567192 175 ntBASIC0.75□□□□□ -2.29
CCDC28AQ8IWP9 MIR376B-201ENST00000614515 100 ntBASIC0.75□□□□□ -2.29
CCDC28AQ8IWP9 AL606490.4-201ENST00000423117 127 ntBASIC0.74□□□□□ -2.29
CCDC28AQ8IWP9 RPL39P34-201ENST00000477141 156 ntBASIC0.74□□□□□ -2.29
CCDC28AQ8IWP9 RNU6-469P-201ENST00000516253 101 ntBASIC0.74□□□□□ -2.29
CCDC28AQ8IWP9 MIR4500-201ENST00000579472 76 ntBASIC0.74□□□□□ -2.29
CCDC28AQ8IWP9 AL365222.1-201ENST00000614661 98 ntBASIC0.74□□□□□ -2.29
CCDC28AQ8IWP9 uc_338.16-201ENST00000621804 95 ntBASIC0.74□□□□□ -2.29
CCDC28AQ8IWP9 AL162726.3-218ENST00000636401 95 ntBASIC0.74□□□□□ -2.29
CCDC28AQ8IWP9 HSBP1P2-201ENST00000299671 229 ntBASIC0.73□□□□□ -2.29
CCDC28AQ8IWP9 Y_RNA.32-201ENST00000362589 110 ntBASIC0.73□□□□□ -2.29
CCDC28AQ8IWP9 Y_RNA.85-201ENST00000363014 111 ntBASIC0.73□□□□□ -2.29
CCDC28AQ8IWP9 Y_RNA.261-201ENST00000364631 102 ntBASIC0.73□□□□□ -2.29
CCDC28AQ8IWP9 Y_RNA.353-201ENST00000365440 108 ntBASIC0.73□□□□□ -2.29
CCDC28AQ8IWP9 RNU6-409P-201ENST00000384114 104 ntBASIC0.73□□□□□ -2.29
CCDC28AQ8IWP9 RNU6-22P-201ENST00000384355 107 ntBASIC0.73□□□□□ -2.29
CCDC28AQ8IWP9 MIR1912-201ENST00000410389 80 ntBASIC0.73□□□□□ -2.29
CCDC28AQ8IWP9 SNORA7.5-201ENST00000410672 110 ntBASIC0.73□□□□□ -2.29
CCDC28AQ8IWP9 RNU4-61P-201ENST00000411243 107 ntBASIC0.73□□□□□ -2.29
CCDC28AQ8IWP9 Y_RNA.56-201ENST00000362798 112 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 Y_RNA.155-201ENST00000363632 101 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 SNORD113-1-201ENST00000365321 69 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 Y_RNA.360-201ENST00000365512 102 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 SNORD38.2-201ENST00000384470 69 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 MIR34C-201ENST00000384831 77 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 MIR548A1-201ENST00000385041 97 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 MIR140-201ENST00000385282 100 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 RNU6-816P-201ENST00000390914 107 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 RNU6-1268P-201ENST00000391214 107 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 RNU6-1239P-201ENST00000391310 107 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 AC004941.2-201ENST00000427009 228 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 RNU6-135P-201ENST00000516769 101 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 MIR548H5-201ENST00000580314 60 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 RNU7-10P-201ENST00000607194 63 ntBASIC0.72□□□□□ -2.29
CCDC28AQ8IWP9 Y_RNA.309-201ENST00000365046 111 ntBASIC0.71□□□□□ -2.3
CCDC28AQ8IWP9 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.71□□□□□ -2.3
CCDC28AQ8IWP9 TRMT112P2-201ENST00000512910 132 ntBASIC0.71□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-237P-201ENST00000515985 71 ntBASIC0.71□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-1018P-201ENST00000516577 106 ntBASIC0.71□□□□□ -2.3
CCDC28AQ8IWP9 SNORA31.14-201ENST00000516728 116 ntBASIC0.71□□□□□ -2.3
CCDC28AQ8IWP9 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.71□□□□□ -2.3
CCDC28AQ8IWP9 AL512310.12-203ENST00000640543 90 ntBASIC0.71□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-1313P-201ENST00000362622 102 ntBASIC0.7□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-1168P-201ENST00000390831 104 ntBASIC0.7□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-733P-201ENST00000410759 104 ntBASIC0.7□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-479P-201ENST00000516348 105 ntBASIC0.7□□□□□ -2.3
CCDC28AQ8IWP9 MIR3678-201ENST00000578455 94 ntBASIC0.7□□□□□ -2.3
CCDC28AQ8IWP9 AL035470.1-201ENST00000622571 220 ntBASIC0.7□□□□□ -2.3
CCDC28AQ8IWP9 MIR337-201ENST00000362281 93 ntBASIC0.69□□□□□ -2.3
CCDC28AQ8IWP9 Y_RNA.338-201ENST00000365320 114 ntBASIC0.69□□□□□ -2.3
CCDC28AQ8IWP9 RNY1P8-201ENST00000383970 114 ntBASIC0.69□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-679P-201ENST00000391003 106 ntBASIC0.69□□□□□ -2.3
CCDC28AQ8IWP9 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.69□□□□□ -2.3
CCDC28AQ8IWP9 AL590095.2-201ENST00000604136 117 ntBASIC0.69□□□□□ -2.3
CCDC28AQ8IWP9 SNORA63.5-201ENST00000363548 123 ntBASIC0.68□□□□□ -2.3
CCDC28AQ8IWP9 RNA5SP205-201ENST00000364653 136 ntBASIC0.68□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-880P-201ENST00000384526 107 ntBASIC0.68□□□□□ -2.3
CCDC28AQ8IWP9 MIR644A-201ENST00000385262 94 ntBASIC0.68□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-1154P-201ENST00000391001 104 ntBASIC0.68□□□□□ -2.3
CCDC28AQ8IWP9 MIR548I2-201ENST00000408348 149 ntBASIC0.68□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-351P-201ENST00000516097 100 ntBASIC0.68□□□□□ -2.3
CCDC28AQ8IWP9 RNU6-313P-201ENST00000516317 112 ntBASIC0.68□□□□□ -2.3
CCDC28AQ8IWP9 MIR6857-201ENST00000613267 93 ntBASIC0.68□□□□□ -2.3
CCDC28AQ8IWP9 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 209 ms