Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 RNY1P6-201ENST00000384193 109 ntBASIC0.24□□□□□ -2.37
VIMP08670 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.24□□□□□ -2.37
VIMP08670 RNA5SP247-201ENST00000411181 105 ntBASIC0.24□□□□□ -2.37
VIMP08670 SNORA31.14-201ENST00000516728 116 ntBASIC0.24□□□□□ -2.37
VIMP08670 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.24□□□□□ -2.37
VIMP08670 U6.106-201ENST00000636360 105 ntBASIC0.24□□□□□ -2.37
VIMP08670 Y_RNA.174-201ENST00000363781 105 ntBASIC0.23□□□□□ -2.37
VIMP08670 Y_RNA.224-201ENST00000364308 111 ntBASIC0.23□□□□□ -2.37
VIMP08670 Y_RNA.412-201ENST00000384001 104 ntBASIC0.23□□□□□ -2.37
VIMP08670 RNU6-1086P-201ENST00000410930 100 ntBASIC0.23□□□□□ -2.37
VIMP08670 SNORA25.16-201ENST00000516741 121 ntBASIC0.23□□□□□ -2.37
VIMP08670 MIR3128-201ENST00000581957 66 ntBASIC0.23□□□□□ -2.37
VIMP08670 AC078938.1-201ENST00000620993 318 ntBASIC0.23□□□□□ -2.37
VIMP08670 Y_RNA.478-201ENST00000384358 107 ntBASIC0.22□□□□□ -2.37
VIMP08670 Y_RNA.521-201ENST00000384560 114 ntBASIC0.22□□□□□ -2.37
VIMP08670 Y_RNA.536-201ENST00000384621 113 ntBASIC0.22□□□□□ -2.37
VIMP08670 MTND5P34-201ENST00000568888 325 ntBASIC0.22□□□□□ -2.37
VIMP08670 Y_RNA.164-201ENST00000363709 102 ntBASIC0.21□□□□□ -2.38
VIMP08670 RNU6-291P-201ENST00000384720 107 ntBASIC0.21□□□□□ -2.38
VIMP08670 RNA5SP144-201ENST00000410846 116 ntBASIC0.21□□□□□ -2.38
VIMP08670 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.21□□□□□ -2.38
VIMP08670 RNU7-79P-201ENST00000516082 62 ntBASIC0.21□□□□□ -2.38
VIMP08670 RNU4-71P-201ENST00000516258 113 ntBASIC0.21□□□□□ -2.38
VIMP08670 Y_RNA.680-201ENST00000516441 93 ntBASIC0.21□□□□□ -2.38
VIMP08670 Y_RNA.697-201ENST00000516776 113 ntBASIC0.21□□□□□ -2.38
VIMP08670 RNA5SP268-201ENST00000516828 124 ntBASIC0.21□□□□□ -2.38
VIMP08670 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.21□□□□□ -2.38
VIMP08670 AC062037.2-201ENST00000610137 73 ntBASIC0.21□□□□□ -2.38
VIMP08670 Y_RNA.52-201ENST00000362760 96 ntBASIC0.2□□□□□ -2.38
VIMP08670 Y_RNA.75-201ENST00000362927 97 ntBASIC0.2□□□□□ -2.38
VIMP08670 Y_RNA.470-201ENST00000384307 117 ntBASIC0.2□□□□□ -2.38
VIMP08670 RNU6-535P-201ENST00000384722 107 ntBASIC0.2□□□□□ -2.38
VIMP08670 MIR4711-201ENST00000578274 70 ntBASIC0.2□□□□□ -2.38
VIMP08670 MIR4431-201ENST00000579990 94 ntBASIC0.2□□□□□ -2.38
VIMP08670 RNU6-349P-201ENST00000362402 107 ntBASIC0.19□□□□□ -2.38
VIMP08670 Y_RNA.60-201ENST00000362831 98 ntBASIC0.19□□□□□ -2.38
VIMP08670 RNU2-59P-201ENST00000410482 191 ntBASIC0.19□□□□□ -2.38
VIMP08670 AC073261.1-201ENST00000429409 121 ntBASIC0.19□□□□□ -2.38
VIMP08670 AL118496.2-201ENST00000448300 230 ntBASIC0.19□□□□□ -2.38
VIMP08670 RNU7-113P-201ENST00000459273 62 ntBASIC0.19□□□□□ -2.38
VIMP08670 RNU6-863P-201ENST00000515989 104 ntBASIC0.19□□□□□ -2.38
VIMP08670 RNU7-35P-201ENST00000517174 62 ntBASIC0.19□□□□□ -2.38
VIMP08670 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.19□□□□□ -2.38
VIMP08670 RNU6-815P-201ENST00000384080 113 ntBASIC0.18□□□□□ -2.38
VIMP08670 RNU6-918P-201ENST00000391219 106 ntBASIC0.18□□□□□ -2.38
VIMP08670 AL022718.1-201ENST00000412004 84 ntBASIC0.18□□□□□ -2.38
VIMP08670 SUMO1P3-201ENST00000439961 304 ntBASIC0.18□□□□□ -2.38
VIMP08670 RNA5SP33-201ENST00000516687 98 ntBASIC0.18□□□□□ -2.38
VIMP08670 RNU6-135P-201ENST00000516769 101 ntBASIC0.18□□□□□ -2.38
VIMP08670 RNU6-111P-201ENST00000517179 105 ntBASIC0.18□□□□□ -2.38
VIMP08670 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.18□□□□□ -2.38
VIMP08670 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.18□□□□□ -2.38
VIMP08670 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.18□□□□□ -2.38
VIMP08670 RNU6-1229P-201ENST00000364295 107 ntBASIC0.17□□□□□ -2.38
VIMP08670 Y_RNA.393-201ENST00000383936 102 ntBASIC0.17□□□□□ -2.38
VIMP08670 RNA5SP236-201ENST00000516169 116 ntBASIC0.17□□□□□ -2.38
VIMP08670 SCARNA15.1-201ENST00000516384 125 ntBASIC0.17□□□□□ -2.38
VIMP08670 DEFB131E-201ENST00000532329 154 ntBASIC0.17□□□□□ -2.38
VIMP08670 MIR3124-201ENST00000582636 67 ntBASIC0.17□□□□□ -2.38
VIMP08670 MIR7107-201ENST00000611489 80 ntBASIC0.17□□□□□ -2.38
VIMP08670 MIR6734-201ENST00000621166 68 ntBASIC0.17□□□□□ -2.38
VIMP08670 Y_RNA.162-201ENST00000363683 102 ntBASIC0.16□□□□□ -2.38
VIMP08670 RNU6-1082P-201ENST00000364574 107 ntBASIC0.16□□□□□ -2.38
VIMP08670 SNORA20.1-201ENST00000364790 130 ntBASIC0.16□□□□□ -2.38
VIMP08670 SNORA32-201ENST00000384072 121 ntBASIC0.16□□□□□ -2.38
VIMP08670 RNU6-768P-201ENST00000384683 107 ntBASIC0.16□□□□□ -2.38
VIMP08670 MIR936-201ENST00000401264 98 ntBASIC0.16□□□□□ -2.38
VIMP08670 AC069271.1-201ENST00000445577 156 ntBASIC0.16□□□□□ -2.38
VIMP08670 RNU6-1023P-201ENST00000516137 106 ntBASIC0.16□□□□□ -2.38
VIMP08670 RNA5SP227-201ENST00000516184 113 ntBASIC0.16□□□□□ -2.38
VIMP08670 RNU6-1045P-201ENST00000516321 107 ntBASIC0.16□□□□□ -2.38
VIMP08670 RNU6-531P-201ENST00000516694 104 ntBASIC0.16□□□□□ -2.38
VIMP08670 SCARNA16.5-201ENST00000517114 183 ntBASIC0.16□□□□□ -2.38
VIMP08670 RNA5SP47-201ENST00000517230 109 ntBASIC0.16□□□□□ -2.38
VIMP08670 AC069113.3-201ENST00000521019 150 ntBASIC0.16□□□□□ -2.38
VIMP08670 AC112693.2-201ENST00000556538 232 ntBASIC0.16□□□□□ -2.38
VIMP08670 U4.1-201ENST00000620349 87 ntBASIC0.16□□□□□ -2.38
VIMP08670 RNA5SP133-201ENST00000363368 119 ntBASIC0.15□□□□□ -2.39
VIMP08670 RNY1-201ENST00000364228 113 ntBASIC0.15□□□□□ -2.39
VIMP08670 RNU6-42P-201ENST00000384165 107 ntBASIC0.15□□□□□ -2.39
VIMP08670 SNORD28-201ENST00000384706 75 ntBASIC0.15□□□□□ -2.39
VIMP08670 RNU6-1194P-201ENST00000516208 104 ntBASIC0.15□□□□□ -2.39
VIMP08670 MIR6828-201ENST00000636181 60 ntBASIC0.15□□□□□ -2.39
VIMP08670 SNORD115-2-201ENST00000362842 82 ntBASIC0.14□□□□□ -2.39
VIMP08670 Y_RNA.120-201ENST00000363304 110 ntBASIC0.14□□□□□ -2.39
VIMP08670 RNU6-1099P-201ENST00000363533 107 ntBASIC0.14□□□□□ -2.39
VIMP08670 SNORD115-20-201ENST00000365099 82 ntBASIC0.14□□□□□ -2.39
VIMP08670 RNU6-690P-201ENST00000365242 106 ntBASIC0.14□□□□□ -2.39
VIMP08670 Y_RNA.447-201ENST00000384184 113 ntBASIC0.14□□□□□ -2.39
VIMP08670 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.14□□□□□ -2.39
VIMP08670 RNA5SP299-201ENST00000391203 116 ntBASIC0.14□□□□□ -2.39
VIMP08670 MIR4639-201ENST00000584938 69 ntBASIC0.14□□□□□ -2.39
VIMP08670 MIR411-201ENST00000362239 96 ntBASIC0.13□□□□□ -2.39
VIMP08670 RNU4-58P-201ENST00000363192 141 ntBASIC0.13□□□□□ -2.39
VIMP08670 RNU6-47P-201ENST00000383866 107 ntBASIC0.13□□□□□ -2.39
VIMP08670 Y_RNA.435-201ENST00000384095 112 ntBASIC0.13□□□□□ -2.39
VIMP08670 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.13□□□□□ -2.39
VIMP08670 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.13□□□□□ -2.39
VIMP08670 AC244669.1-204ENST00000621564 178 ntBASIC0.13□□□□□ -2.39
VIMP08670 U6.109-201ENST00000636749 87 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 211.3 ms