Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.15□□□□□ -2.39
TPM4P67936 Vault.3-201ENST00000516676 95 ntBASIC0.15□□□□□ -2.39
TPM4P67936 MIR3941-201ENST00000582572 103 ntBASIC0.15□□□□□ -2.39
TPM4P67936 MIR4452-201ENST00000583004 71 ntBASIC0.15□□□□□ -2.39
TPM4P67936 AC007014.2-201ENST00000615581 479 ntBASIC0.15□□□□□ -2.39
TPM4P67936 AC139792.3-201ENST00000623525 224 ntBASIC0.15□□□□□ -2.39
TPM4P67936 SEPT14P19-203ENST00000633205 211 ntBASIC0.15□□□□□ -2.39
TPM4P67936 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
TPM4P67936 RNU6-74P-201ENST00000384235 107 ntBASIC0.14□□□□□ -2.39
TPM4P67936 MIR140-201ENST00000385282 100 ntBASIC0.14□□□□□ -2.39
TPM4P67936 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.14□□□□□ -2.39
TPM4P67936 AL663109.1-201ENST00000411498 844 ntBASIC0.14□□□□□ -2.39
TPM4P67936 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC0.14□□□□□ -2.39
TPM4P67936 AL512286.1-201ENST00000439244 400 ntBASIC0.14□□□□□ -2.39
TPM4P67936 RNU6-344P-201ENST00000516635 111 ntBASIC0.14□□□□□ -2.39
TPM4P67936 AP003072.2-201ENST00000527756 676 ntBASIC0.14□□□□□ -2.39
TPM4P67936 AP003716.2-201ENST00000528260 108 ntBASIC0.14□□□□□ -2.39
TPM4P67936 BNIP3P39-201ENST00000601077 554 ntBASIC0.14□□□□□ -2.39
TPM4P67936 uc_338.11-201ENST00000619132 160 ntBASIC0.14□□□□□ -2.39
TPM4P67936 RNU6-227P-201ENST00000362865 103 ntBASIC0.13□□□□□ -2.39
TPM4P67936 RNU5E-5P-201ENST00000365379 116 ntBASIC0.13□□□□□ -2.39
TPM4P67936 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC0.13□□□□□ -2.39
TPM4P67936 AC067940.1-201ENST00000458411 300 ntBASIC0.13□□□□□ -2.39
TPM4P67936 RNU7-12P-201ENST00000516030 62 ntBASIC0.13□□□□□ -2.39
TPM4P67936 RNU6-612P-201ENST00000516909 102 ntBASIC0.13□□□□□ -2.39
TPM4P67936 RNU2-46P-201ENST00000517038 113 ntBASIC0.13□□□□□ -2.39
TPM4P67936 RNA5SP454-201ENST00000517231 127 ntBASIC0.13□□□□□ -2.39
TPM4P67936 MIR4711-201ENST00000578274 70 ntBASIC0.13□□□□□ -2.39
TPM4P67936 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.13□□□□□ -2.39
TPM4P67936 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.13□□□□□ -2.39
TPM4P67936 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.12□□□□□ -2.39
TPM4P67936 MIR103A2-201ENST00000362154 78 ntBASIC0.12□□□□□ -2.39
TPM4P67936 Y_RNA.265-201ENST00000364677 108 ntBASIC0.12□□□□□ -2.39
TPM4P67936 RNU6-906P-201ENST00000384700 70 ntBASIC0.12□□□□□ -2.39
TPM4P67936 RNA5SP299-201ENST00000391203 116 ntBASIC0.12□□□□□ -2.39
TPM4P67936 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.12□□□□□ -2.39
TPM4P67936 RNU6-177P-201ENST00000411257 104 ntBASIC0.12□□□□□ -2.39
TPM4P67936 GPR143P-201ENST00000434155 205 ntBASIC0.12□□□□□ -2.39
TPM4P67936 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.12□□□□□ -2.39
TPM4P67936 USP9YP29-201ENST00000445112 563 ntBASIC0.12□□□□□ -2.39
TPM4P67936 TAF9P1-201ENST00000445421 515 ntBASIC0.12□□□□□ -2.39
TPM4P67936 TAF9P2-201ENST00000454958 515 ntBASIC0.12□□□□□ -2.39
TPM4P67936 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.12□□□□□ -2.39
TPM4P67936 RPS29P27-201ENST00000463711 170 ntBASIC0.12□□□□□ -2.39
TPM4P67936 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.12□□□□□ -2.39
TPM4P67936 AL117336.2-201ENST00000602435 335 ntBASIC0.12□□□□□ -2.39
TPM4P67936 RNU6-85P-201ENST00000605989 107 ntBASIC0.12□□□□□ -2.39
TPM4P67936 SCARNA4-201ENST00000629045 128 ntBASIC0.12□□□□□ -2.39
TPM4P67936 RNU6-1286P-201ENST00000383871 107 ntBASIC0.11□□□□□ -2.39
TPM4P67936 MIR320B2-201ENST00000408479 138 ntBASIC0.11□□□□□ -2.39
TPM4P67936 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.11□□□□□ -2.39
TPM4P67936 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.11□□□□□ -2.39
TPM4P67936 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.11□□□□□ -2.39
TPM4P67936 RNU6-430P-201ENST00000517078 107 ntBASIC0.11□□□□□ -2.39
TPM4P67936 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.11□□□□□ -2.39
TPM4P67936 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.11□□□□□ -2.39
TPM4P67936 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.11□□□□□ -2.39
TPM4P67936 MIR4703-201ENST00000577728 79 ntBASIC0.11□□□□□ -2.39
TPM4P67936 AC018645.2-201ENST00000609151 472 ntBASIC0.11□□□□□ -2.39
TPM4P67936 AC122133.1-201ENST00000613964 233 ntBASIC0.11□□□□□ -2.39
TPM4P67936 AL390237.1-201ENST00000404226 1415 ntBASIC0.11□□□□□ -2.39
TPM4P67936 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.1□□□□□ -2.39
TPM4P67936 Y_RNA.399-201ENST00000383955 105 ntBASIC0.1□□□□□ -2.39
TPM4P67936 SNORD105-201ENST00000386910 85 ntBASIC0.1□□□□□ -2.39
TPM4P67936 RNU6-1106P-201ENST00000390845 107 ntBASIC0.1□□□□□ -2.39
TPM4P67936 RNA5SP247-201ENST00000411181 105 ntBASIC0.1□□□□□ -2.39
TPM4P67936 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.1□□□□□ -2.39
TPM4P67936 RPS29P15-201ENST00000458329 171 ntBASIC0.1□□□□□ -2.39
TPM4P67936 SCARNA18-201ENST00000459004 134 ntBASIC0.1□□□□□ -2.39
TPM4P67936 AP000870.1-201ENST00000472927 406 ntBASIC0.1□□□□□ -2.39
TPM4P67936 RPL39P5-202ENST00000512505 151 ntBASIC0.1□□□□□ -2.39
TPM4P67936 RNU7-28P-201ENST00000516759 62 ntBASIC0.1□□□□□ -2.39
TPM4P67936 RNU1-117P-201ENST00000517041 158 ntBASIC0.1□□□□□ -2.39
TPM4P67936 7SK.7-201ENST00000603504 247 ntBASIC0.1□□□□□ -2.39
TPM4P67936 RNU6-94P-201ENST00000607728 107 ntBASIC0.1□□□□□ -2.39
TPM4P67936 SNORA40.4-201ENST00000390971 128 ntBASIC0.09□□□□□ -2.4
TPM4P67936 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC0.09□□□□□ -2.4
TPM4P67936 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.09□□□□□ -2.4
TPM4P67936 GMFBP1-201ENST00000467831 427 ntBASIC0.09□□□□□ -2.4
TPM4P67936 MTND2P32-201ENST00000521584 1038 ntBASIC0.09□□□□□ -2.4
TPM4P67936 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.09□□□□□ -2.4
TPM4P67936 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.09□□□□□ -2.4
TPM4P67936 FRG2DP-202ENST00000566967 323 ntBASIC0.09□□□□□ -2.4
TPM4P67936 MIR4509-3-201ENST00000578671 94 ntBASIC0.09□□□□□ -2.4
TPM4P67936 MIR4509-2-201ENST00000583920 94 ntBASIC0.09□□□□□ -2.4
TPM4P67936 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.09□□□□□ -2.4
TPM4P67936 MIR4509-1-201ENST00000618224 94 ntBASIC0.09□□□□□ -2.4
TPM4P67936 MTND4P9-201ENST00000507819 1346 ntBASIC0.09□□□□□ -2.4
TPM4P67936 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.08□□□□□ -2.4
TPM4P67936 MTND4P4-201ENST00000439033 1366 ntBASIC0.08□□□□□ -2.4
TPM4P67936 RNU1-133P-201ENST00000364867 167 ntBASIC0.08□□□□□ -2.4
TPM4P67936 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC0.08□□□□□ -2.4
TPM4P67936 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC0.08□□□□□ -2.4
TPM4P67936 MIR4431-201ENST00000579990 94 ntBASIC0.08□□□□□ -2.4
TPM4P67936 AL138726.1-201ENST00000614873 333 ntBASIC0.08□□□□□ -2.4
TPM4P67936 MIR6079-201ENST00000635807 62 ntBASIC0.08□□□□□ -2.4
TPM4P67936 RNU6-1266P-201ENST00000362794 105 ntBASIC0.07□□□□□ -2.4
TPM4P67936 RNU6-108P-201ENST00000365558 107 ntBASIC0.07□□□□□ -2.4
TPM4P67936 MIR526A1-201ENST00000384897 85 ntBASIC0.07□□□□□ -2.4
TPM4P67936 MIR936-201ENST00000401264 98 ntBASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 178.1 ms