Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 RNU6-410P-201ENST00000517006 107 ntBASIC2.28□□□□□ -2.04
CCDC43Q96MW1 RNU6-667P-201ENST00000517186 102 ntBASIC2.28□□□□□ -2.04
CCDC43Q96MW1 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC43Q96MW1 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC43Q96MW1 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC43Q96MW1 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC43Q96MW1 AC121758.2-201ENST00000553271 193 ntBASIC2.28□□□□□ -2.04
CCDC43Q96MW1 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC43Q96MW1 AC002984.1-201ENST00000591692 448 ntBASIC2.28□□□□□ -2.04
CCDC43Q96MW1 AC009314.1-201ENST00000603871 304 ntBASIC2.28□□□□□ -2.04
CCDC43Q96MW1 Z99289.3-201ENST00000605586 594 ntBASIC2.28□□□□□ -2.04
CCDC43Q96MW1 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.28□□□□□ -2.04
CCDC43Q96MW1 AL162373.1-201ENST00000620433 407 ntBASIC2.28□□□□□ -2.04
CCDC43Q96MW1 AC011155.2-201ENST00000623202 216 ntBASIC2.28□□□□□ -2.04
CCDC43Q96MW1 AC091931.1-201ENST00000623488 728 ntBASIC2.28□□□□□ -2.04
CCDC43Q96MW1 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
CCDC43Q96MW1 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.28□□□□□ -2.04
CCDC43Q96MW1 FARSBP1-201ENST00000435808 1778 ntBASIC2.28□□□□□ -2.04
CCDC43Q96MW1 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 MTND4P1-201ENST00000457501 1466 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 ANKRD20A17P-201ENST00000511745 1330 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 SNORA62.1-201ENST00000364287 154 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 U3.13-201ENST00000364804 214 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 RNA5SP160-201ENST00000364866 120 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 RNU6-1274P-201ENST00000384557 107 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 RNU6-297P-201ENST00000384636 107 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 SNORA26.8-201ENST00000391306 124 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 MTND2P18-201ENST00000419962 1030 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 GPR143P-201ENST00000434155 205 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 GPM6BP3-201ENST00000442797 145 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 RNU1-41P-201ENST00000516161 162 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 RNU1-48P-201ENST00000516400 162 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 NDUFA5P6-201ENST00000542110 379 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.27□□□□□ -2.05
CCDC43Q96MW1 AC116312.1-201ENST00000606841 314 ntBASIC2.27□□□□□ -2.05
CCDC43Q96MW1 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
CCDC43Q96MW1 RNA5SP276-201ENST00000362580 94 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 RNU6-1287P-201ENST00000362914 107 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 RNU6-1210P-201ENST00000363775 107 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 RNU4-52P-201ENST00000384209 138 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 RNU6-74P-201ENST00000384235 107 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 RNU6-1060P-201ENST00000384664 107 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 RNU6-550P-201ENST00000391057 101 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 MIR1261-201ENST00000408659 82 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 RNU4-26P-201ENST00000410270 107 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 AL356379.1-201ENST00000414105 126 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 CYCSP33-201ENST00000414485 327 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC43Q96MW1 AC096920.1-201ENST00000423991 241 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 MTND2P4-201ENST00000445034 1004 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 AC079781.2-201ENST00000446424 169 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 SNRPGP9-201ENST00000456025 225 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 HMGB1P35-201ENST00000503360 598 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC43Q96MW1 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC43Q96MW1 RNU1-40P-201ENST00000516816 164 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 RNU1-97P-201ENST00000516872 164 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 Y_RNA.717-201ENST00000517106 92 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC43Q96MW1 CLIC4P2-201ENST00000601934 717 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 RMST_4.1-201ENST00000616886 107 ntBASIC2.26□□□□□ -2.05
CCDC43Q96MW1 ZNF702P-202ENST00000434269 1966 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 RNU6-78P-201ENST00000362897 107 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 RNU6-45P-201ENST00000384471 107 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 RNY3P10-201ENST00000384764 102 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.25□□□□□ -2.05
CCDC43Q96MW1 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.25□□□□□ -2.05
CCDC43Q96MW1 CBX3P9-201ENST00000402326 552 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 GSTA9P-201ENST00000406231 611 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 RNU2-3P-201ENST00000410144 191 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 RNU2-32P-201ENST00000411193 191 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC43Q96MW1 MTND3P17-201ENST00000416968 344 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.25□□□□□ -2.05
CCDC43Q96MW1 AC027124.2-201ENST00000428249 105 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC43Q96MW1 AL137159.1-201ENST00000452808 512 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 SNORD42A-201ENST00000459584 64 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 AC025033.1-201ENST00000463883 194 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC43Q96MW1 AP003392.2-201ENST00000527269 208 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC43Q96MW1 CYCSP27-201ENST00000527643 293 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 AP000763.2-201ENST00000540641 163 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 AC012414.6-201ENST00000568241 401 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 217.6 ms