Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AL133173.2-201ENST00000614270 90 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
CCDC43Q96MW1 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC43Q96MW1 SNORD14B-201ENST00000364533 90 ntBASIC2.42□□□□□ -2.02
CCDC43Q96MW1 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC43Q96MW1 MTND5P25-201ENST00000430499 799 ntBASIC2.42□□□□□ -2.02
CCDC43Q96MW1 AC104850.1-201ENST00000435940 476 ntBASIC2.42□□□□□ -2.02
CCDC43Q96MW1 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC2.42□□□□□ -2.02
CCDC43Q96MW1 CALM1P1-201ENST00000442082 433 ntBASIC2.42□□□□□ -2.02
CCDC43Q96MW1 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.42□□□□□ -2.02
CCDC43Q96MW1 NDUFB1P2-201ENST00000449477 176 ntBASIC2.42□□□□□ -2.02
CCDC43Q96MW1 AC117503.1-201ENST00000472241 394 ntBASIC2.42□□□□□ -2.02
CCDC43Q96MW1 AC109486.1-201ENST00000486833 374 ntBASIC2.42□□□□□ -2.02
CCDC43Q96MW1 MTAPP1-201ENST00000489154 819 ntBASIC2.42□□□□□ -2.02
CCDC43Q96MW1 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC43Q96MW1 MTCYBP35-201ENST00000503630 1137 ntBASIC2.42□□□□□ -2.02
CCDC43Q96MW1 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC43Q96MW1 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC43Q96MW1 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC2.42□□□□□ -2.02
CCDC43Q96MW1 AC136619.2-201ENST00000563361 631 ntBASIC2.42□□□□□ -2.02
CCDC43Q96MW1 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC43Q96MW1 BNIP3P30-201ENST00000601184 574 ntBASIC2.42□□□□□ -2.02
CCDC43Q96MW1 AL138889.2-201ENST00000603883 242 ntBASIC2.42□□□□□ -2.02
CCDC43Q96MW1 NDUFA8P1-201ENST00000605525 367 ntBASIC2.42□□□□□ -2.02
CCDC43Q96MW1 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC43Q96MW1 MIR3529-201ENST00000637713 78 ntBASIC2.42□□□□□ -2.02
CCDC43Q96MW1 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC43Q96MW1 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.42□□□□□ -2.02
CCDC43Q96MW1 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
CCDC43Q96MW1 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC43Q96MW1 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC43Q96MW1 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC43Q96MW1 SNORA16B-201ENST00000364674 135 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 RNU6-61P-201ENST00000365528 109 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 RNU6-843P-201ENST00000384454 104 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC43Q96MW1 PGBD4P3-201ENST00000440731 581 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 MTND6P13-201ENST00000443510 523 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC43Q96MW1 SCARNA16.3-201ENST00000516595 184 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC43Q96MW1 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC43Q96MW1 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC43Q96MW1 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC43Q96MW1 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.41□□□□□ -2.02
CCDC43Q96MW1 MTATP6P24-201ENST00000576835 677 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 MIR3126-201ENST00000577443 74 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 BNIP3P8-201ENST00000597863 560 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 RPL30P11-203ENST00000598995 310 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 AL670379.4-201ENST00000605279 254 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 AC021646.1-201ENST00000605469 484 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 AL121992.2-201ENST00000606262 256 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.41□□□□□ -2.02
CCDC43Q96MW1 AC012360.2-201ENST00000609349 391 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 AC022202.1-201ENST00000613515 211 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 AC023510.2-201ENST00000622162 746 ntBASIC2.41□□□□□ -2.02
CCDC43Q96MW1 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
CCDC43Q96MW1 U8.3-201ENST00000363321 132 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 RNU6-169P-201ENST00000365336 107 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 RNU1-57P-201ENST00000384491 166 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 MIR95-201ENST00000385072 81 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 SNORA48.3-201ENST00000391081 134 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
CCDC43Q96MW1 RN7SKP32-201ENST00000410167 303 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
CCDC43Q96MW1 UBE2V1P10-201ENST00000414685 269 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 EDDM3CP-201ENST00000415977 425 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 PGBD4P6-201ENST00000421501 610 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 AC008267.5-201ENST00000424928 265 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.4□□□□□ -2.03
CCDC43Q96MW1 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC43Q96MW1 HMGB1P30-201ENST00000492455 606 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 RPL9P6-201ENST00000492764 598 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.4□□□□□ -2.03
CCDC43Q96MW1 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC43Q96MW1 SCARNA24.1-201ENST00000516465 137 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.4□□□□□ -2.03
CCDC43Q96MW1 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.4□□□□□ -2.03
CCDC43Q96MW1 AP004607.1-201ENST00000524456 203 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 CR383656.8-201ENST00000549046 145 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC43Q96MW1 AL121917.1-203ENST00000605534 577 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 AL360219.1-201ENST00000610230 366 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 AC005858.4-201ENST00000623191 700 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 AP003400.5-201ENST00000624827 617 ntBASIC2.4□□□□□ -2.03
CCDC43Q96MW1 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
CCDC43Q96MW1 AL596028.1-201ENST00000326971 197 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 RNU6-371P-201ENST00000364283 108 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 RNY4P34-201ENST00000364779 95 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 RNU6-384P-201ENST00000364900 104 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 MIR561-201ENST00000385216 97 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 OOSP1P1-201ENST00000423265 274 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 MTATP6P16-201ENST00000434543 526 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.39□□□□□ -2.03
CCDC43Q96MW1 AC004263.1-201ENST00000479327 332 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC2.39□□□□□ -2.03
CCDC43Q96MW1 MTND1P22-201ENST00000510572 951 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 SNORA4.4-201ENST00000515921 135 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 Y_RNA.687-201ENST00000516558 91 ntBASIC2.39□□□□□ -2.03
CCDC43Q96MW1 RNA5SP82-201ENST00000516707 92 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 193.6 ms