Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 SRGNP1-201ENST00000603392 451 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 IGHV3-29-201ENST00000604817 344 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL138726.1-201ENST00000614873 333 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC005086.4-201ENST00000623065 213 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC132825.6-201ENST00000638861 357 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC6.15□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 TCP11X1-202ENST00000622971 1372 ntBASIC6.15□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC6.15□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNY3P13-201ENST00000365542 102 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU6-444P-201ENST00000383988 108 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU6-641P-201ENST00000384006 107 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU6-662P-201ENST00000384253 104 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 Y_RNA.477-201ENST00000384352 108 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU1-13P-201ENST00000384499 162 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 Y_RNA.562-201ENST00000384695 113 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 MIR449B-201ENST00000384995 97 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RPL21P1-201ENST00000399532 476 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RN7SKP235-201ENST00000410662 305 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RPEP3-201ENST00000425462 676 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC010881.1-201ENST00000433830 235 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 TIMM9P1-201ENST00000436122 256 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL359672.1-201ENST00000442302 409 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 MTND4LP30-201ENST00000454092 297 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 MTCO3P2-201ENST00000457365 171 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 SNORA81.3-201ENST00000517283 198 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 DLEU2_5.1-201ENST00000615567 84 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 SNX18P1Y-201ENST00000616231 511 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL606534.2-204ENST00000635008 178 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 U6.114-201ENST00000636407 96 ntBASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 OR56A5-201ENST00000340110 738 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU6-770P-201ENST00000363929 105 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 Y_RNA.404-201ENST00000383978 102 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU6-317P-201ENST00000384031 107 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 EIF5P1-201ENST00000400019 1231 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 BX510359.2-201ENST00000417920 305 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC140479.3-201ENST00000418944 1126 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 COX6CP15-201ENST00000426313 211 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 GOT2P5-201ENST00000433995 546 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC073910.1-201ENST00000445047 438 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RPS26P24-201ENST00000497656 331 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC114801.2-201ENST00000503825 781 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 Y_RNA.719-201ENST00000517156 106 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU1-54P-201ENST00000517181 120 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 LARP7P2-201ENST00000575306 125 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RN7SL435P-201ENST00000584418 282 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC084757.4-201ENST00000616350 526 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC244517.1-201ENST00000606030 2086 ntBASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC6.13□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 SMG1P6-201ENST00000532337 2930 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU6-562P-201ENST00000362731 107 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 Y_RNA.106-201ENST00000363189 100 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 U3.11-201ENST00000364476 212 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 Y_RNA.270-201ENST00000364693 104 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 MT-TW-201ENST00000387382 68 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU2-36P-201ENST00000410361 191 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 168.3 ms