Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COPB1P53618 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COPB1P53618 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.93■□□□□ 0.94
COPB1P53618 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COPB1P53618 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COPB1P53618 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
COPB1P53618 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COPB1P53618 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.93■□□□□ 0.94
COPB1P53618 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.93■□□□□ 0.94
COPB1P53618 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COPB1P53618 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
COPB1P53618 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.93■□□□□ 0.94
COPB1P53618 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
COPB1P53618 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
COPB1P53618 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
COPB1P53618 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COPB1P53618 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.93■□□□□ 0.94
COPB1P53618 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
COPB1P53618 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COPB1P53618 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COPB1P53618 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
COPB1P53618 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
COPB1P53618 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COPB1P53618 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COPB1P53618 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COPB1P53618 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
COPB1P53618 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COPB1P53618 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COPB1P53618 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COPB1P53618 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COPB1P53618 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COPB1P53618 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.92■□□□□ 0.94
COPB1P53618 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.92■□□□□ 0.94
COPB1P53618 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.92■□□□□ 0.94
COPB1P53618 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.92■□□□□ 0.94
COPB1P53618 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
COPB1P53618 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COPB1P53618 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.92■□□□□ 0.94
COPB1P53618 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
COPB1P53618 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COPB1P53618 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
COPB1P53618 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COPB1P53618 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
COPB1P53618 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
COPB1P53618 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
COPB1P53618 AC135050.7-201ENST00000624508 2218 ntBASIC20.92■□□□□ 0.94
COPB1P53618 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.92■□□□□ 0.94
COPB1P53618 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.92■□□□□ 0.94
COPB1P53618 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
COPB1P53618 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
COPB1P53618 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
COPB1P53618 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.91■□□□□ 0.94
COPB1P53618 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
COPB1P53618 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.91■□□□□ 0.94
COPB1P53618 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.91■□□□□ 0.94
COPB1P53618 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.91■□□□□ 0.94
COPB1P53618 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
COPB1P53618 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.91■□□□□ 0.94
COPB1P53618 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.91■□□□□ 0.94
COPB1P53618 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.91■□□□□ 0.94
COPB1P53618 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
COPB1P53618 AC083906.6-201ENST00000641366 219 ntBASIC20.91■□□□□ 0.94
COPB1P53618 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
COPB1P53618 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.9■□□□□ 0.94
COPB1P53618 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPB1P53618 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
COPB1P53618 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.9■□□□□ 0.94
COPB1P53618 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
COPB1P53618 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.9■□□□□ 0.94
COPB1P53618 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPB1P53618 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPB1P53618 ANO7L1-203ENST00000602586 1720 ntBASIC20.9■□□□□ 0.94
COPB1P53618 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.9■□□□□ 0.94
COPB1P53618 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
COPB1P53618 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPB1P53618 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPB1P53618 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPB1P53618 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
COPB1P53618 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COPB1P53618 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPB1P53618 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.9■□□□□ 0.94
COPB1P53618 AC069152.1-201ENST00000438030 544 ntBASIC20.9■□□□□ 0.94
COPB1P53618 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.9■□□□□ 0.94
COPB1P53618 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms