Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL645944.1-201ENST00000603857 493 ntBASIC2.9□□□□□ -1.94
SHANK3Q9BYB0 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.94
SHANK3Q9BYB0 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 RNU6-146P-201ENST00000384602 108 ntBASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 AL034374.1-201ENST00000406329 351 ntBASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 SDCBPP3-201ENST00000419629 891 ntBASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 AL390023.1-201ENST00000428836 262 ntBASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 GAPDHP27-201ENST00000447427 1020 ntBASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 SNORA4-201ENST00000584302 138 ntBASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 AC091046.2-201ENST00000620775 665 ntBASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
SHANK3Q9BYB0 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 SNORA25.6-201ENST00000364121 118 ntBASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 RNA5SP498-201ENST00000411342 120 ntBASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 SEC63P1-201ENST00000425785 1258 ntBASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 AL451074.3-201ENST00000437709 472 ntBASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 NPM1P49-201ENST00000448027 714 ntBASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 C1DP3-201ENST00000455013 423 ntBASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 IGHVIII-38-1-201ENST00000521454 282 ntBASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 IGLVIV-66-1-201ENST00000521832 460 ntBASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 AP000790.1-201ENST00000528891 737 ntBASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 AC123786.2-201ENST00000603459 275 ntBASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 AC009501.3-201ENST00000605001 1352 ntBASIC2.89□□□□□ -1.95
SHANK3Q9BYB0 RNU6-386P-201ENST00000362650 107 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 MIR221-201ENST00000385135 110 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 RNA5SP270-201ENST00000411361 118 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AC099336.2-201ENST00000422457 254 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AC093716.1-201ENST00000435923 377 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 CEACAMP4-201ENST00000457676 421 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 RPL5P13-201ENST00000462840 709 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 SCARNA16.3-201ENST00000516595 184 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AC012182.1-201ENST00000570133 895 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AC005021.1-201ENST00000608730 355 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AC010378.1-201ENST00000619270 362 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 MIR21-201ENST00000362134 72 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 RNU4-23P-201ENST00000362839 140 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 OR5H15-201ENST00000383696 930 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 SNORD88.1-201ENST00000408684 91 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 RN7SKP123-201ENST00000410732 291 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AL353597.2-202ENST00000434901 373 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AC004866.2-201ENST00000438285 481 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AC004263.1-201ENST00000479327 332 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 RNA5SP309-201ENST00000516670 106 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 C1GALT1P1-201ENST00000548895 1089 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 ADAM3B-201ENST00000569937 840 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 AC107294.3-201ENST00000609211 526 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.88□□□□□ -1.95
SHANK3Q9BYB0 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 RNU6-532P-201ENST00000384318 107 ntBASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 OR5D17P-201ENST00000531492 978 ntBASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 AC084033.1-201ENST00000550830 633 ntBASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 Xist_exon1.1-201ENST00000618930 85 ntBASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC2.87□□□□□ -1.95
SHANK3Q9BYB0 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 GSTA12P-201ENST00000402398 508 ntBASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 RNU6-603P-201ENST00000411403 107 ntBASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 ARL5AP3-201ENST00000439327 386 ntBASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 AC009238.1-201ENST00000442165 424 ntBASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 AC009237.6-201ENST00000446969 424 ntBASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 TRMT112P2-201ENST00000512910 132 ntBASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 190.3 ms