Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 RPS27AP18-201ENST00000515536 459 ntBASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 AC068657.1-201ENST00000520807 306 ntBASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 HPRT1P3-201ENST00000539521 576 ntBASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 AC090695.1-201ENST00000561269 1222 ntBASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 AC023043.2-201ENST00000589678 1026 ntBASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.34□□□□□ -1.87
SHANK3Q9BYB0 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
SHANK3Q9BYB0 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 MIR137-201ENST00000385223 102 ntBASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 AL359511.1-201ENST00000402970 211 ntBASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 AL355379.1-201ENST00000405542 640 ntBASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 RNU6-1053P-201ENST00000515930 101 ntBASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 AC022884.3-201ENST00000579571 248 ntBASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 AC011492.1-201ENST00000600023 315 ntBASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 MIR148B-201ENST00000362252 99 ntBASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 snoU13.18-201ENST00000459483 104 ntBASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 SNORA9.3-201ENST00000516383 129 ntBASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 AL121839.1-201ENST00000556233 1185 ntBASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 AC083760.1-201ENST00000589621 670 ntBASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 AC002543.1-201ENST00000299783 1954 ntBASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 AL450326.2-201ENST00000421913 1962 ntBASIC3.33□□□□□ -1.88
SHANK3Q9BYB0 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 RPL21P71-201ENST00000465598 459 ntBASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 MTND2P17-201ENST00000550281 688 ntBASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 CBX3P5-201ENST00000552017 521 ntBASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 MIR1273D-201ENST00000577266 86 ntBASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 AC022069.1-201ENST00000582910 658 ntBASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 MAPK10-373ENST00000641983 6772 ntBASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.32□□□□□ -1.88
SHANK3Q9BYB0 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 MIR181B1-201ENST00000385240 110 ntBASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 RPL7P52-201ENST00000449200 742 ntBASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 AC008277.2-201ENST00000605196 797 ntBASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 PWAR6-201ENST00000552334 4618 ntBASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SHANK3Q9BYB0 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 AC004987.3-201ENST00000413879 771 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 BTG3P1-201ENST00000435859 716 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 RN7SL636P-201ENST00000497504 294 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 AC234781.5-201ENST00000508429 271 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 AL133271.1-201ENST00000538229 291 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 AC128657.1-201ENST00000549459 145 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 AC009063.1-201ENST00000563342 702 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 VN1R9P-201ENST00000614184 867 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 CRYM-AS1-204ENST00000637983 556 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 MIR518E-201ENST00000385252 88 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 HMGB3P10-201ENST00000434734 572 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 183 ms