Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
VPS25Q9BRG1 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
VPS25Q9BRG1 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 AC093484.2-201ENST00000580996 2166 ntBASIC13.52□□□□□ -0.25
VPS25Q9BRG1 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
VPS25Q9BRG1 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 AL162377.1-201ENST00000618844 1793 ntBASIC13.51□□□□□ -0.25
VPS25Q9BRG1 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 MIR3960-201ENST00000583311 91 ntBASIC13.51□□□□□ -0.25
VPS25Q9BRG1 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 AC022211.2-201ENST00000585075 2527 ntBASIC13.51□□□□□ -0.25
VPS25Q9BRG1 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 DET1-207ENST00000564406 2315 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC13.51□□□□□ -0.25
VPS25Q9BRG1 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
VPS25Q9BRG1 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 AL049796.1-201ENST00000565336 1766 ntBASIC13.5□□□□□ -0.25
VPS25Q9BRG1 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 DUX4L13-201ENST00000554103 1267 ntBASIC13.5□□□□□ -0.25
VPS25Q9BRG1 DUX4L15-201ENST00000611059 1267 ntBASIC13.5□□□□□ -0.25
VPS25Q9BRG1 DUX4L23-201ENST00000615195 1269 ntBASIC13.5□□□□□ -0.25
VPS25Q9BRG1 DUX4L24-201ENST00000617576 1269 ntBASIC13.5□□□□□ -0.25
VPS25Q9BRG1 DUX4L22-201ENST00000618238 1269 ntBASIC13.5□□□□□ -0.25
VPS25Q9BRG1 DUX4L20-201ENST00000619712 1269 ntBASIC13.5□□□□□ -0.25
VPS25Q9BRG1 DUX4L21-201ENST00000622058 1269 ntBASIC13.5□□□□□ -0.25
VPS25Q9BRG1 DUX4L10-201ENST00000622460 1267 ntBASIC13.5□□□□□ -0.25
VPS25Q9BRG1 DUX4L25-201ENST00000624915 1269 ntBASIC13.5□□□□□ -0.25
VPS25Q9BRG1 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
VPS25Q9BRG1 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms