Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.684e-8■□□□□ 10.3
U2AF1Q01081 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.558e-6■□□□□ 10.3
U2AF1Q01081 PROX1-AS1-242ENST00000630180 954 ntTSL 518.18■□□□□ 0.58e-6■□□□□ 10.3
U2AF1Q01081 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC17.87■□□□□ 0.458e-6■□□□□ 10.3
U2AF1Q01081 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.458e-6■□□□□ 10.3
U2AF1Q01081 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.448e-6■□□□□ 10.3
U2AF1Q01081 CDS2-205ENST00000468817 2706 ntTSL 217.7■□□□□ 0.428e-6■□□□□ 10.3
U2AF1Q01081 WWC2-209ENST00000513834 4887 ntTSL 5 BASIC16.55■□□□□ 0.248e-6■□□□□ 10.3
U2AF1Q01081 PROX1-AS1-245ENST00000630538 921 ntTSL 514.77□□□□□ -0.058e-6■□□□□ 10.3
U2AF1Q01081 XPO7-202ENST00000433566 4519 ntTSL 5 BASIC14.58□□□□□ -0.078e-6■□□□□ 10.3
U2AF1Q01081 WWC2-204ENST00000448232 6356 ntTSL 5 BASIC14.54□□□□□ -0.088e-6■□□□□ 10.3
U2AF1Q01081 WWC2-205ENST00000504005 5247 ntTSL 2 BASIC14.38□□□□□ -0.118e-6■□□□□ 10.3
U2AF1Q01081 PROX1-AS1-239ENST00000629743 695 ntTSL 514.29□□□□□ -0.128e-6■□□□□ 10.3
U2AF1Q01081 PROX1-AS1-225ENST00000625722 830 ntTSL 513.31□□□□□ -0.288e-6■□□□□ 10.3
U2AF1Q01081 WWC2-202ENST00000427431 6373 ntTSL 213.29□□□□□ -0.288e-6■□□□□ 10.3
U2AF1Q01081 PROX1-AS1-205ENST00000598091 720 ntTSL 5 BASIC12.73□□□□□ -0.378e-6■□□□□ 10.3
U2AF1Q01081 CDS2-201ENST00000379070 2713 ntTSL 211.82□□□□□ -0.528e-6■□□□□ 10.3
U2AF1Q01081 UBA1-203ENST00000377351 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.524e-8■□□□□ 10.3
U2AF1Q01081 PROX1-AS1-234ENST00000628143 324 ntTSL 511.75□□□□□ -0.538e-6■□□□□ 10.3
U2AF1Q01081 PROX1-AS1-216ENST00000608936 900 ntTSL 511.24□□□□□ -0.618e-6■□□□□ 10.3
U2AF1Q01081 PROX1-AS1-243ENST00000630223 710 ntTSL 511.06□□□□□ -0.648e-6■□□□□ 10.3
U2AF1Q01081 PROX1-AS1-226ENST00000626034 310 ntTSL 510.71□□□□□ -0.698e-6■□□□□ 10.3
U2AF1Q01081 PROX1-AS1-228ENST00000626372 504 ntTSL 510□□□□□ -0.818e-6■□□□□ 10.3
U2AF1Q01081 WWC2-203ENST00000438543 3824 ntTSL 29.67□□□□□ -0.868e-6■□□□□ 10.3
U2AF1Q01081 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC9.18□□□□□ -0.948e-6■□□□□ 10.3
U2AF1Q01081 XPO7-206ENST00000519769 590 ntTSL 35.86□□□□□ -1.478e-6■□□□□ 10.3
U2AF1Q01081 XPO7-204ENST00000518017 939 ntTSL 1 (best)5.29□□□□□ -1.568e-6■□□□□ 10.3
U2AF1Q01081 XPO7-208ENST00000521303 569 ntTSL 54.59□□□□□ -1.678e-6■□□□□ 10.3
U2AF1Q01081 CCDC142-203ENST00000454193 2309 ntTSL 225.08■■□□□ 1.611e-8■□□□□ 10.3
U2AF1Q01081 CCDC142-204ENST00000471713 1035 ntTSL 523.95■■□□□ 1.421e-8■□□□□ 10.3
U2AF1Q01081 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC22.34■■□□□ 1.171e-8■□□□□ 10.3
U2AF1Q01081 CCDC142-205ENST00000472962 645 ntTSL 320.79■□□□□ 0.921e-8■□□□□ 10.3
U2AF1Q01081 CCDC142-207ENST00000474681 735 ntTSL 518.23■□□□□ 0.511e-8■□□□□ 10.3
U2AF1Q01081 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.451e-8■□□□□ 10.3
U2AF1Q01081 NEAT1_1.1-201ENST00000620348 120 ntBASIC15.45■□□□□ 0.061e-323■□□□□ 10.3
U2AF1Q01081 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.82e-7■□□□□ 10.3
U2AF1Q01081 MFF-226ENST00000531278 584 ntTSL 232.03■■■□□ 2.724e-9■□□□□ 10.3
U2AF1Q01081 MFF-210ENST00000423098 581 ntTSL 329.28■■■□□ 2.284e-9■□□□□ 10.3
U2AF1Q01081 MFF-208ENST00000409616 1247 ntTSL 5 BASIC28.94■■■□□ 2.224e-9■□□□□ 10.3
U2AF1Q01081 MFF-207ENST00000409565 1548 ntTSL 2 BASIC28.46■■■□□ 2.154e-9■□□□□ 10.3
U2AF1Q01081 MFF-203ENST00000349901 1716 ntTSL 2 BASIC27.98■■■□□ 2.074e-9■□□□□ 10.3
U2AF1Q01081 MFF-225ENST00000530359 560 ntTSL 427.45■■□□□ 1.984e-9■□□□□ 10.3
U2AF1Q01081 MFF-205ENST00000354503 1085 ntTSL 2 BASIC27.08■■□□□ 1.934e-9■□□□□ 10.3
U2AF1Q01081 MFF-221ENST00000489696 639 ntTSL 327.08■■□□□ 1.934e-9■□□□□ 10.3
U2AF1Q01081 MFF-224ENST00000525195 558 ntTSL 424.45■■□□□ 1.54e-9■□□□□ 10.3
U2AF1Q01081 MFF-214ENST00000452930 736 ntTSL 424.4■■□□□ 1.54e-9■□□□□ 10.3
U2AF1Q01081 MFF-211ENST00000436237 527 ntTSL 424.24■■□□□ 1.474e-9■□□□□ 10.3
U2AF1Q01081 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.14e-9■□□□□ 10.3
U2AF1Q01081 MFF-209ENST00000418961 720 ntTSL 521.64■■□□□ 1.054e-9■□□□□ 10.3
U2AF1Q01081 MFF-213ENST00000443428 566 ntTSL 221.48■■□□□ 1.034e-9■□□□□ 10.3
U2AF1Q01081 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC20.96■□□□□ 0.954e-9■□□□□ 10.3
U2AF1Q01081 MFF-204ENST00000353339 2186 ntTSL 5 BASIC20.77■□□□□ 0.924e-9■□□□□ 10.3
U2AF1Q01081 MFF-217ENST00000470090 597 ntTSL 220.2■□□□□ 0.824e-9■□□□□ 10.3
U2AF1Q01081 MFF-223ENST00000524634 647 ntTSL 2 BASIC20.2■□□□□ 0.824e-9■□□□□ 10.3
U2AF1Q01081 MFF-219ENST00000476924 820 ntTSL 217.21■□□□□ 0.354e-9■□□□□ 10.3
U2AF1Q01081 MFF-227ENST00000534203 576 ntTSL 317.21■□□□□ 0.354e-9■□□□□ 10.3
U2AF1Q01081 MFF-216ENST00000460756 3524 ntTSL 513.44□□□□□ -0.264e-9■□□□□ 10.3
U2AF1Q01081 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.69□□□□□ -1.664e-9■□□□□ 10.3
U2AF1Q01081 DDX3X-206ENST00000542215 1592 ntTSL 224.28■■□□□ 1.482e-9■□□□□ 10.3
U2AF1Q01081 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.292e-9■□□□□ 10.3
U2AF1Q01081 DDX3X-215ENST00000625837 3237 ntTSL 5 BASIC13.95□□□□□ -0.182e-9■□□□□ 10.3
U2AF1Q01081 DDX3X-203ENST00000457138 5346 ntTSL 2 BASIC13.82□□□□□ -0.22e-9■□□□□ 10.3
U2AF1Q01081 DDX3X-216ENST00000626301 3013 ntTSL 5 BASIC13.52□□□□□ -0.242e-9■□□□□ 10.3
U2AF1Q01081 DDX3X-217ENST00000629496 5023 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.342e-9■□□□□ 10.3
U2AF1Q01081 DDX3X-220ENST00000630370 3120 ntTSL 512.8□□□□□ -0.362e-9■□□□□ 10.3
U2AF1Q01081 DDX3X-218ENST00000629785 3457 ntTSL 512.79□□□□□ -0.362e-9■□□□□ 10.3
U2AF1Q01081 DDX3X-219ENST00000630255 3289 ntTSL 512.4□□□□□ -0.422e-9■□□□□ 10.3
U2AF1Q01081 DDX3X-221ENST00000630858 3181 ntTSL 512.23□□□□□ -0.452e-9■□□□□ 10.3
U2AF1Q01081 DDX3X-204ENST00000478993 3397 ntTSL 1 (best)11.87□□□□□ -0.512e-9■□□□□ 10.3
U2AF1Q01081 DDX3X-202ENST00000441189 1051 ntTSL 2 BASIC11.01□□□□□ -0.652e-9■□□□□ 10.3
U2AF1Q01081 TBL1XR1-201ENST00000352800 611 ntTSL 528.86■■■□□ 2.212e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-204ENST00000422442 564 ntTSL 524.61■■□□□ 1.532e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-203ENST00000422066 604 ntTSL 423.7■■□□□ 1.382e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-209ENST00000431421 550 ntTSL 423.7■■□□□ 1.382e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-219ENST00000627825 312 ntTSL 522.58■■□□□ 1.212e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-217ENST00000626672 568 ntTSL 422.46■■□□□ 1.192e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-202ENST00000413084 592 ntTSL 422.09■■□□□ 1.132e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-206ENST00000427349 554 ntTSL 322.09■■□□□ 1.132e-7■□□□□ 10.3
U2AF1Q01081 UBAC1-203ENST00000471163 838 ntTSL 321.87■■□□□ 1.092e-11■□□□□ 10.3
U2AF1Q01081 UBAC1-202ENST00000465873 882 ntTSL 221.77■■□□□ 1.082e-11■□□□□ 10.3
U2AF1Q01081 TBL1XR1-210ENST00000431674 559 ntTSL 421.73■■□□□ 1.072e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-213ENST00000450267 588 ntTSL 321.42■■□□□ 1.022e-7■□□□□ 10.3
U2AF1Q01081 KEL-206ENST00000476829 649 ntTSL 320.6■□□□□ 0.893e-7■□□□□ 10.3
U2AF1Q01081 WASF2-202ENST00000618852 5676 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.192e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-207ENST00000428970 575 ntTSL 413.72□□□□□ -0.212e-7■□□□□ 10.3
U2AF1Q01081 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.652e-7■□□□□ 10.3
U2AF1Q01081 WASF2-201ENST00000536657 1083 ntTSL 2 BASIC10.55□□□□□ -0.722e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-231ENST00000637137 107 ntTSL 59.65□□□□□ -0.862e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-205ENST00000424913 592 ntTSL 49.45□□□□□ -0.92e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-211ENST00000437738 565 ntTSL 59.39□□□□□ -0.912e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-220ENST00000630796 656 ntTSL 59.18□□□□□ -0.942e-7■□□□□ 10.3
U2AF1Q01081 MFN1-202ENST00000357390 3148 ntTSL 28.73□□□□□ -1.012e-7■□□□□ 10.3
U2AF1Q01081 MFN1-206ENST00000474903 1919 ntTSL 1 (best)8.46□□□□□ -1.052e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-224ENST00000635794 768 ntTSL 56.89□□□□□ -1.312e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-221ENST00000630833 567 ntTSL 46.55□□□□□ -1.362e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-212ENST00000443315 580 ntTSL 45.84□□□□□ -1.472e-7■□□□□ 10.3
U2AF1Q01081 MFN1-207ENST00000480636 837 ntTSL 35.1□□□□□ -1.592e-7■□□□□ 10.3
U2AF1Q01081 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.592e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-216ENST00000491623 582 ntTSL 54.42□□□□□ -1.72e-7■□□□□ 10.3
U2AF1Q01081 TBL1XR1-232ENST00000637544 214 ntTSL 53.06□□□□□ -1.922e-7■□□□□ 10.3
Retrieved 100 of 10,096 protein–RNA pairs in 41.8 ms