RNA–Protein interactions for RNA: ENST00000335972.10

UBA1-201, Transcript of ubiquitin like modifier activating enzyme 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBA1, Length 3,559 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBA1-201ENST00000335972 NISCHQ9Y2I1 1504 aa30.76■■■□□ 2.51
UBA1-201ENST00000335972 SHROOM4Q9ULL8 1493 aa26.74■■□□□ 1.87
UBA1-201ENST00000335972 DCAF8L2P0C7V8 631 aa26.21■■□□□ 1.79
UBA1-201ENST00000335972 SUPT5HO00267 1087 aaKnown RBP26.17■■□□□ 1.78
UBA1-201ENST00000335972 ZCCHC6Q5VYS8 1495 aaKnown RBP25.94■■□□□ 1.74
UBA1-201ENST00000335972 CCDC180Q9P1Z9 1646 aa25.92■■□□□ 1.74
UBA1-201ENST00000335972 CHIC1Q5VXU3 224 aa25.15■■□□□ 1.62
UBA1-201ENST00000335972 MYO15BQ96JP2 1530 aa25.05■■□□□ 1.6
UBA1-201ENST00000335972 DCAF1Q9Y4B6 1507 aa24.95■■□□□ 1.58
UBA1-201ENST00000335972 SCRIBQ14160 1630 aa24.73■■□□□ 1.55
UBA1-201ENST00000335972 ABCC9O60706 1549 aa24.67■■□□□ 1.54
UBA1-201ENST00000335972 LOC105371045A0A1W2PR82 267 aa24.64■■□□□ 1.54
UBA1-201ENST00000335972 PCGF6Q9BYE7 350 aa24.48■■□□□ 1.51
UBA1-201ENST00000335972 RSF1Q96T23 1441 aaPredicted RBP24.42■■□□□ 1.5
UBA1-201ENST00000335972 EHMT2Q96KQ7 1210 aa24.32■■□□□ 1.48
UBA1-201ENST00000335972 FAM9AQ8IZU1 332 aaPredicted RBP24.29■■□□□ 1.48
UBA1-201ENST00000335972 CECR2Q9BXF3 1484 aa24.23■■□□□ 1.47
UBA1-201ENST00000335972 TRIM41Q8WV44 630 aa24.2■■□□□ 1.46
UBA1-201ENST00000335972 RB1CC1Q8TDY2 1594 aa24.18■■□□□ 1.46
UBA1-201ENST00000335972 HRCP23327 699 aa24.17■■□□□ 1.46
UBA1-201ENST00000335972 NACADO15069 1562 aa24.1■■□□□ 1.45
UBA1-201ENST00000335972 MROH2BQ7Z745 1585 aa24.04■■□□□ 1.44
UBA1-201ENST00000335972 PPARGC1BQ86YN6 1023 aaKnown RBP24.04■■□□□ 1.44
UBA1-201ENST00000335972 WIZO95785 1651 aa23.91■■□□□ 1.42
UBA1-201ENST00000335972 TRIM26Q12899 539 aaPredicted RBP23.77■■□□□ 1.4
UBA1-201ENST00000335972 PABPN1Q86U42 306 aaKnown RBP eCLIP23.76■■□□□ 1.398e-7■■■□□ 15
UBA1-201ENST00000335972 BAZ1AQ9NRL2 1556 aaPredicted RBP23.58■■□□□ 1.36
UBA1-201ENST00000335972 UNC13AQ9UPW8 1703 aa23.47■■□□□ 1.35
UBA1-201ENST00000335972 ABCC8Q09428 1581 aa23.45■■□□□ 1.35
UBA1-201ENST00000335972 TTBK1Q5TCY1 1321 aaPredicted RBP23.45■■□□□ 1.34
UBA1-201ENST00000335972 SMARCA4P51532 1647 aa23.43■■□□□ 1.34
UBA1-201ENST00000335972 CCDC88BA6NC98 1476 aa23.43■■□□□ 1.34
UBA1-201ENST00000335972 TOP2AP11388 1531 aaKnown RBP23.36■■□□□ 1.33
UBA1-201ENST00000335972 EIF4G1Q04637 1599 aaKnown RBP23.3■■□□□ 1.32
UBA1-201ENST00000335972 SMARCA2P51531 1590 aa23.29■■□□□ 1.32
UBA1-201ENST00000335972 SOGA1O94964 1423 aa23.24■■□□□ 1.31
UBA1-201ENST00000335972 BICRAQ9NZM4 1560 aa23.22■■□□□ 1.31
UBA1-201ENST00000335972 RUSC2Q8N2Y8 1516 aa23.17■■□□□ 1.3
UBA1-201ENST00000335972 UBTFP17480 764 aaKnown RBP23.15■■□□□ 1.3
UBA1-201ENST00000335972 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.12■■□□□ 1.29
UBA1-201ENST00000335972 CSRNP3Q8WYN3 585 aa23.06■■□□□ 1.28
UBA1-201ENST00000335972 ZEB1P37275 1124 aaPredicted RBP23.05■■□□□ 1.28
UBA1-201ENST00000335972 RANGAP1P46060 587 aaPredicted RBP23.03■■□□□ 1.28
UBA1-201ENST00000335972 CEP162Q5TB80 1403 aa22.99■■□□□ 1.27
UBA1-201ENST00000335972 CCER1Q8TC90 406 aaPredicted RBP22.96■■□□□ 1.27
UBA1-201ENST00000335972 WRNQ14191 1432 aaPredicted RBP eCLIP22.95■■□□□ 1.264e-7■■■□□ 16.7
UBA1-201ENST00000335972 ATAD2BQ9ULI0 1458 aa22.92■■□□□ 1.26
UBA1-201ENST00000335972 BAZ1BQ9UIG0 1483 aaKnown RBP22.89■■□□□ 1.25
UBA1-201ENST00000335972 TNIKQ9UKE5 1360 aa22.85■■□□□ 1.25
UBA1-201ENST00000335972 SYNJ1O43426 1573 aa22.83■■□□□ 1.25
UBA1-201ENST00000335972 PEG3Q9GZU2 1588 aa22.79■■□□□ 1.24
UBA1-201ENST00000335972 GOLGA3Q08378 1498 aa22.75■■□□□ 1.23
UBA1-201ENST00000335972 EEA1Q15075 1411 aa22.74■■□□□ 1.23
UBA1-201ENST00000335972 HNRNPUL2Q1KMD3 747 aaKnown RBP22.67■■□□□ 1.22
UBA1-201ENST00000335972 RAPGEF2Q9Y4G8 1499 aa22.61■■□□□ 1.21
UBA1-201ENST00000335972 CEP164Q9UPV0 1460 aa22.6■■□□□ 1.21
UBA1-201ENST00000335972 CLIP1P30622 1438 aa22.6■■□□□ 1.21
UBA1-201ENST00000335972 APLP2Q06481 763 aa22.51■■□□□ 1.19
UBA1-201ENST00000335972 KIF21BO75037 1637 aa22.45■■□□□ 1.18
UBA1-201ENST00000335972 TOP2BQ02880 1626 aa22.41■■□□□ 1.18
UBA1-201ENST00000335972 VPS8Q8N3P4 1428 aa22.39■■□□□ 1.17
UBA1-201ENST00000335972 NCAPD3P42695 1498 aa22.39■■□□□ 1.17
UBA1-201ENST00000335972 DIEXFQ68CQ4 756 aaKnown RBP22.38■■□□□ 1.17
UBA1-201ENST00000335972 CUX1P39880 1505 aa22.35■■□□□ 1.17
UBA1-201ENST00000335972 SCAF1Q9H7N4 1312 aaKnown RBP22.33■■□□□ 1.17
UBA1-201ENST00000335972 KANK4Q5T7N3 995 aaPredicted RBP22.29■■□□□ 1.16
UBA1-201ENST00000335972 HMGXB3Q12766 1538 aa22.28■■□□□ 1.16
UBA1-201ENST00000335972 BIVM-ERCC5R4GMW8 1640 aa22.25■■□□□ 1.15
UBA1-201ENST00000335972 CFTRP13569 1480 aa22.22■■□□□ 1.15
UBA1-201ENST00000335972 PRXQ9BXM0 1461 aa22.22■■□□□ 1.15
UBA1-201ENST00000335972 KIF27Q86VH2 1401 aa22.22■■□□□ 1.15
UBA1-201ENST00000335972 ITGAEP38570 1179 aa22.21■■□□□ 1.15
UBA1-201ENST00000335972 ARAP1Q96P48 1450 aa22.18■■□□□ 1.14
UBA1-201ENST00000335972 NEUROD1Q13562 356 aa22.18■■□□□ 1.14
UBA1-201ENST00000335972 ZNF316A6NFI3 1004 aaPredicted RBP22.17■■□□□ 1.14
UBA1-201ENST00000335972 CUX2O14529 1486 aa22.13■■□□□ 1.13
UBA1-201ENST00000335972 P3H3Q8IVL6 736 aa22.13■■□□□ 1.13
UBA1-201ENST00000335972 YTHDC1Q96MU7 727 aaKnown RBP22.13■■□□□ 1.13
UBA1-201ENST00000335972 ATP1B4Q9UN42 357 aaPredicted RBP22.09■■□□□ 1.13
UBA1-201ENST00000335972 ERICH3Q5RHP9 1530 aa22.09■■□□□ 1.13
UBA1-201ENST00000335972 CADPSQ9ULU8 1353 aa22.08■■□□□ 1.13
UBA1-201ENST00000335972 ACIN1Q9UKV3 1341 aaKnown RBP22.06■■□□□ 1.12
UBA1-201ENST00000335972 IGF1RP08069 1367 aa22.04■■□□□ 1.12
UBA1-201ENST00000335972 ARHGAP35Q9NRY4 1499 aa22.01■■□□□ 1.11
UBA1-201ENST00000335972 FGD5Q6ZNL6 1462 aa22.01■■□□□ 1.11
UBA1-201ENST00000335972 CC2D2AQ9P2K1 1620 aa22■■□□□ 1.11
UBA1-201ENST00000335972 MIER1Q8N108 512 aa21.99■■□□□ 1.11
UBA1-201ENST00000335972 CARMIL1Q5VZK9 1371 aa21.98■■□□□ 1.11
UBA1-201ENST00000335972 NESP48681 1621 aa21.95■■□□□ 1.1
UBA1-201ENST00000335972 GTF3C3Q9Y5Q9 886 aa21.94■■□□□ 1.1
UBA1-201ENST00000335972 DNAJC5BQ9UF47 199 aa21.93■■□□□ 1.1
UBA1-201ENST00000335972 RAD54L2Q9Y4B4 1467 aa21.93■■□□□ 1.1
UBA1-201ENST00000335972 CENPBP07199 599 aaPredicted RBP21.91■■□□□ 1.1
UBA1-201ENST00000335972 DHX57Q6P158 1386 aaKnown RBP21.9■■□□□ 1.1
UBA1-201ENST00000335972 FANCD2Q9BXW9 1451 aa21.9■■□□□ 1.1
UBA1-201ENST00000335972 CCNB3Q8WWL7 1395 aa21.85■■□□□ 1.09
UBA1-201ENST00000335972 FAM50AQ14320 339 aaKnown RBP21.84■■□□□ 1.09
UBA1-201ENST00000335972 PRDM2Q13029 1718 aa21.79■■□□□ 1.08
UBA1-201ENST00000335972 RRBP1Q9P2E9 1410 aaKnown RBP21.79■■□□□ 1.08
UBA1-201ENST00000335972 FHOD3Q2V2M9 1422 aa21.77■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms