Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.93■□□□□ 0.62
LSM1O15116 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.93■□□□□ 0.62
LSM1O15116 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.93■□□□□ 0.62
LSM1O15116 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
LSM1O15116 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.93■□□□□ 0.62
LSM1O15116 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
LSM1O15116 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
LSM1O15116 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.93■□□□□ 0.62
LSM1O15116 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.93■□□□□ 0.62
LSM1O15116 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
LSM1O15116 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LSM1O15116 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LSM1O15116 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.92■□□□□ 0.62
LSM1O15116 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LSM1O15116 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.92■□□□□ 0.62
LSM1O15116 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.92■□□□□ 0.62
LSM1O15116 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.92■□□□□ 0.62
LSM1O15116 AC133552.2-202ENST00000575694 574 ntBASIC18.92■□□□□ 0.62
LSM1O15116 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.92■□□□□ 0.62
LSM1O15116 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
LSM1O15116 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LSM1O15116 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.92■□□□□ 0.62
LSM1O15116 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LSM1O15116 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LSM1O15116 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
LSM1O15116 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.92■□□□□ 0.62
LSM1O15116 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LSM1O15116 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
LSM1O15116 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LSM1O15116 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.91■□□□□ 0.62
LSM1O15116 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LSM1O15116 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
LSM1O15116 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LSM1O15116 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.91■□□□□ 0.62
LSM1O15116 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.91■□□□□ 0.62
LSM1O15116 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.91■□□□□ 0.62
LSM1O15116 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.91■□□□□ 0.62
LSM1O15116 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
LSM1O15116 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.91■□□□□ 0.62
LSM1O15116 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LSM1O15116 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.9■□□□□ 0.62
LSM1O15116 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.9■□□□□ 0.62
LSM1O15116 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
LSM1O15116 GPX1P1-201ENST00000388829 606 ntBASIC18.9■□□□□ 0.62
LSM1O15116 LSM12P1-201ENST00000411836 588 ntBASIC18.9■□□□□ 0.62
LSM1O15116 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.9■□□□□ 0.62
LSM1O15116 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.9■□□□□ 0.62
LSM1O15116 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
LSM1O15116 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.9■□□□□ 0.62
LSM1O15116 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.9■□□□□ 0.62
LSM1O15116 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LSM1O15116 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms