Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LDB2O43679 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.83■□□□□ 0.77
LDB2O43679 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.83■□□□□ 0.77
LDB2O43679 AC018553.1-201ENST00000616682 1458 ntBASIC19.83■□□□□ 0.76
LDB2O43679 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
LDB2O43679 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LDB2O43679 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
LDB2O43679 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.83■□□□□ 0.76
LDB2O43679 AC124283.5-201ENST00000624661 1809 ntBASIC19.83■□□□□ 0.76
LDB2O43679 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.83■□□□□ 0.76
LDB2O43679 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.83■□□□□ 0.76
LDB2O43679 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
LDB2O43679 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
LDB2O43679 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LDB2O43679 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LDB2O43679 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LDB2O43679 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LDB2O43679 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LDB2O43679 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LDB2O43679 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LDB2O43679 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.82■□□□□ 0.76
LDB2O43679 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LDB2O43679 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LDB2O43679 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LDB2O43679 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
LDB2O43679 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LDB2O43679 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.82■□□□□ 0.76
LDB2O43679 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LDB2O43679 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LDB2O43679 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LDB2O43679 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
LDB2O43679 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.81■□□□□ 0.76
LDB2O43679 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LDB2O43679 TREX1-205ENST00000625293 1783 ntBASIC19.81■□□□□ 0.76
LDB2O43679 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LDB2O43679 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
LDB2O43679 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LDB2O43679 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.81■□□□□ 0.76
LDB2O43679 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.81■□□□□ 0.76
LDB2O43679 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LDB2O43679 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.81■□□□□ 0.76
LDB2O43679 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.81■□□□□ 0.76
LDB2O43679 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
LDB2O43679 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.81■□□□□ 0.76
LDB2O43679 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.81■□□□□ 0.76
LDB2O43679 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
LDB2O43679 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
LDB2O43679 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LDB2O43679 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.81■□□□□ 0.76
LDB2O43679 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LDB2O43679 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.81■□□□□ 0.76
LDB2O43679 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
LDB2O43679 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
LDB2O43679 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LDB2O43679 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.8■□□□□ 0.76
LDB2O43679 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.8■□□□□ 0.76
LDB2O43679 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LDB2O43679 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LDB2O43679 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LDB2O43679 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LDB2O43679 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.8■□□□□ 0.76
LDB2O43679 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.8■□□□□ 0.76
LDB2O43679 RPS2P52-201ENST00000469610 820 ntBASIC19.8■□□□□ 0.76
LDB2O43679 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.8■□□□□ 0.76
LDB2O43679 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LDB2O43679 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.8■□□□□ 0.76
LDB2O43679 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.8■□□□□ 0.76
LDB2O43679 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
LDB2O43679 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LDB2O43679 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.8■□□□□ 0.76
LDB2O43679 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
LDB2O43679 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LDB2O43679 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LDB2O43679 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LDB2O43679 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
LDB2O43679 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.8■□□□□ 0.76
LDB2O43679 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LDB2O43679 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LDB2O43679 TFP1-202ENST00000475455 1573 ntBASIC19.79■□□□□ 0.76
LDB2O43679 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LDB2O43679 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LDB2O43679 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LDB2O43679 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LDB2O43679 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.79■□□□□ 0.76
LDB2O43679 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.79■□□□□ 0.76
LDB2O43679 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.79■□□□□ 0.76
LDB2O43679 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LDB2O43679 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.79■□□□□ 0.76
LDB2O43679 SOX15-203ENST00000570788 1093 ntBASIC19.79■□□□□ 0.76
LDB2O43679 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.79■□□□□ 0.76
LDB2O43679 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.79■□□□□ 0.76
LDB2O43679 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.79■□□□□ 0.76
LDB2O43679 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LDB2O43679 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.79■□□□□ 0.76
LDB2O43679 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LDB2O43679 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LDB2O43679 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
LDB2O43679 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LDB2O43679 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
LDB2O43679 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 127.1 ms