Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LSM1O15116 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LSM1O15116 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LSM1O15116 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.08■□□□□ 0.65
LSM1O15116 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LSM1O15116 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LSM1O15116 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LSM1O15116 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
LSM1O15116 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LSM1O15116 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LSM1O15116 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.08■□□□□ 0.64
LSM1O15116 AL355472.2-201ENST00000422958 438 ntBASIC19.08■□□□□ 0.64
LSM1O15116 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LSM1O15116 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.08■□□□□ 0.64
LSM1O15116 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LSM1O15116 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
LSM1O15116 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LSM1O15116 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LSM1O15116 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.08■□□□□ 0.64
LSM1O15116 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LSM1O15116 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LSM1O15116 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.08■□□□□ 0.64
LSM1O15116 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
LSM1O15116 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.08■□□□□ 0.64
LSM1O15116 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LSM1O15116 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.08■□□□□ 0.64
LSM1O15116 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.08■□□□□ 0.64
LSM1O15116 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.08■□□□□ 0.64
LSM1O15116 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.08■□□□□ 0.64
LSM1O15116 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LSM1O15116 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LSM1O15116 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
LSM1O15116 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.07■□□□□ 0.64
LSM1O15116 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 AP001271.2-201ENST00000624018 1556 ntBASIC19.07■□□□□ 0.64
LSM1O15116 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.07■□□□□ 0.64
LSM1O15116 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 RARRES2P6-201ENST00000567333 442 ntBASIC19.07■□□□□ 0.64
LSM1O15116 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.07■□□□□ 0.64
LSM1O15116 BID-214ENST00000617586 542 ntTSL 5 BASIC19.07■□□□□ 0.64
LSM1O15116 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.07■□□□□ 0.64
LSM1O15116 AC231657.2-201ENST00000624556 255 ntBASIC19.07■□□□□ 0.64
LSM1O15116 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.07■□□□□ 0.64
LSM1O15116 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.07■□□□□ 0.64
LSM1O15116 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.07■□□□□ 0.64
LSM1O15116 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LSM1O15116 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
LSM1O15116 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.06■□□□□ 0.64
LSM1O15116 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.06■□□□□ 0.64
LSM1O15116 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.06■□□□□ 0.64
LSM1O15116 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.06■□□□□ 0.64
LSM1O15116 AC008694.1-202ENST00000636953 945 ntBASIC19.06■□□□□ 0.64
LSM1O15116 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
LSM1O15116 AC098818.2-201ENST00000564925 2320 ntBASIC19.06■□□□□ 0.64
LSM1O15116 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LSM1O15116 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.06■□□□□ 0.64
LSM1O15116 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LSM1O15116 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
LSM1O15116 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.05■□□□□ 0.64
LSM1O15116 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.05■□□□□ 0.64
LSM1O15116 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
LSM1O15116 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LSM1O15116 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.05■□□□□ 0.64
LSM1O15116 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.05■□□□□ 0.64
LSM1O15116 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LSM1O15116 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.05■□□□□ 0.64
LSM1O15116 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LSM1O15116 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms