Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LSM1O15116 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
LSM1O15116 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LSM1O15116 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LSM1O15116 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.12■□□□□ 0.65
LSM1O15116 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LSM1O15116 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LSM1O15116 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LSM1O15116 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LSM1O15116 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LSM1O15116 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LSM1O15116 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.12■□□□□ 0.65
LSM1O15116 KRT8P20-201ENST00000423953 1409 ntBASIC19.12■□□□□ 0.65
LSM1O15116 KRT16P6-202ENST00000425692 1426 ntBASIC19.12■□□□□ 0.65
LSM1O15116 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
LSM1O15116 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
LSM1O15116 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LSM1O15116 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.12■□□□□ 0.65
LSM1O15116 CYP2T1P-201ENST00000432607 1285 ntBASIC19.12■□□□□ 0.65
LSM1O15116 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.12■□□□□ 0.65
LSM1O15116 CYP2T3P-201ENST00000601990 817 ntBASIC19.12■□□□□ 0.65
LSM1O15116 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.12■□□□□ 0.65
LSM1O15116 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
LSM1O15116 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
LSM1O15116 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LSM1O15116 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
LSM1O15116 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
LSM1O15116 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LSM1O15116 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LSM1O15116 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LSM1O15116 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
LSM1O15116 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
LSM1O15116 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
LSM1O15116 AC026271.2-201ENST00000428091 497 ntBASIC19.11■□□□□ 0.65
LSM1O15116 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.11■□□□□ 0.65
LSM1O15116 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.11■□□□□ 0.65
LSM1O15116 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
LSM1O15116 AC018445.3-201ENST00000624177 1945 ntBASIC19.11■□□□□ 0.65
LSM1O15116 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.11■□□□□ 0.65
LSM1O15116 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LSM1O15116 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LSM1O15116 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LSM1O15116 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LSM1O15116 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
LSM1O15116 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.11■□□□□ 0.65
LSM1O15116 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.1■□□□□ 0.65
LSM1O15116 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.1■□□□□ 0.65
LSM1O15116 AC069236.1-201ENST00000604339 616 ntBASIC19.1■□□□□ 0.65
LSM1O15116 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.1■□□□□ 0.65
LSM1O15116 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
LSM1O15116 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.1■□□□□ 0.65
LSM1O15116 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LSM1O15116 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LSM1O15116 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.09■□□□□ 0.65
LSM1O15116 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LSM1O15116 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LSM1O15116 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LSM1O15116 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
LSM1O15116 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
LSM1O15116 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
LSM1O15116 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LSM1O15116 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
LSM1O15116 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
LSM1O15116 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.09■□□□□ 0.65
LSM1O15116 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.09■□□□□ 0.65
LSM1O15116 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
LSM1O15116 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.09■□□□□ 0.65
LSM1O15116 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.09■□□□□ 0.65
LSM1O15116 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.09■□□□□ 0.65
LSM1O15116 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.09■□□□□ 0.65
LSM1O15116 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.09■□□□□ 0.65
LSM1O15116 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.09■□□□□ 0.65
LSM1O15116 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
LSM1O15116 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LSM1O15116 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.09■□□□□ 0.65
LSM1O15116 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LSM1O15116 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LSM1O15116 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LSM1O15116 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.09■□□□□ 0.65
LSM1O15116 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
LSM1O15116 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LSM1O15116 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
LSM1O15116 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.09■□□□□ 0.65
LSM1O15116 BX323043.1-201ENST00000641006 1765 ntBASIC19.09■□□□□ 0.65
LSM1O15116 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LSM1O15116 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms