Protein–RNA interactions for Protein: P0C2J1

TY1B-PR3, Transposon Ty1-PR3 Gag-Pol polyprotein, yeastyeast

Known RBP Predictions only

Length 1,755 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1B-PR3P0C2J1 YOR376W-AYOR376W-A 156 nt-2.03□□□□□ -2.73
TY1B-PR3P0C2J1 YLR286W-AYLR286W-A 135 nt-2.04□□□□□ -2.74
TY1B-PR3P0C2J1 Q0255Q0255 1419 nt-2.04□□□□□ -2.74
TY1B-PR3P0C2J1 YJR157WYJR157W 363 nt-2.05□□□□□ -2.74
TY1B-PR3P0C2J1 tW(UCA)QtW(UCA)Q 74 nt-2.05□□□□□ -2.74
TY1B-PR3P0C2J1 YKL123WYKL123W 381 nt-2.08□□□□□ -2.74
TY1B-PR3P0C2J1 YLR120W-AYLR120W-A 102 nt-2.08□□□□□ -2.74
TY1B-PR3P0C2J1 YLR285C-AYLR285C-A 171 nt-2.08□□□□□ -2.74
TY1B-PR3P0C2J1 YNL122CYNL122C 348 nt-2.08□□□□□ -2.74
TY1B-PR3P0C2J1 YEL014CYEL014C 306 nt-2.08□□□□□ -2.74
TY1B-PR3P0C2J1 YOR381W-AYOR381W-A 168 nt-2.08□□□□□ -2.74
TY1B-PR3P0C2J1 YPR197CYPR197C 564 nt-2.09□□□□□ -2.74
TY1B-PR3P0C2J1 YOR329W-AYOR329W-A 210 nt-2.1□□□□□ -2.75
TY1B-PR3P0C2J1 YHR180C-BYHR180C-B 105 nt-2.11□□□□□ -2.75
TY1B-PR3P0C2J1 HTL1YCR020W-B 237 nt-2.12□□□□□ -2.75
TY1B-PR3P0C2J1 YBR178WYBR178W 375 nt-2.12□□□□□ -2.75
TY1B-PR3P0C2J1 BIL1YOR304C-A 231 nt-2.13□□□□□ -2.75
TY1B-PR3P0C2J1 YOR316C-AYOR316C-A 210 nt-2.13□□□□□ -2.75
TY1B-PR3P0C2J1 YGL041CYGL041C 204 nt-2.15□□□□□ -2.75
TY1B-PR3P0C2J1 YLR299C-AYLR299C-A 93 nt-2.2□□□□□ -2.76
TY1B-PR3P0C2J1 snR78snR78 87 nt-2.22□□□□□ -2.76
TY1B-PR3P0C2J1 YOL083C-AYOL083C-A 141 nt-2.28□□□□□ -2.77
TY1B-PR3P0C2J1 YAL063C-AYAL063C-A 291 nt-2.3□□□□□ -2.78
TY1B-PR3P0C2J1 YDR524W-CYDR524W-C 90 nt-2.33□□□□□ -2.78
TY1B-PR3P0C2J1 YER181CYER181C 324 nt-2.33□□□□□ -2.78
TY1B-PR3P0C2J1 snR55snR55 98 nt-2.33□□□□□ -2.78
TY1B-PR3P0C2J1 YDR183C-AYDR183C-A 258 nt-2.33□□□□□ -2.78
TY1B-PR3P0C2J1 YDR413CYDR413C 576 nt-2.34□□□□□ -2.78
TY1B-PR3P0C2J1 YKL118WYKL118W 312 nt-2.38□□□□□ -2.79
TY1B-PR3P0C2J1 YOR102WYOR102W 351 nt-2.38□□□□□ -2.79
TY1B-PR3P0C2J1 YGR035CYGR035C 351 nt-2.38□□□□□ -2.79
TY1B-PR3P0C2J1 YBR131C-AYBR131C-A 90 nt-2.38□□□□□ -2.79
TY1B-PR3P0C2J1 YLR222C-AYLR222C-A 231 nt-2.42□□□□□ -2.8
TY1B-PR3P0C2J1 tF(GAA)QtF(GAA)Q 75 nt-2.43□□□□□ -2.8
TY1B-PR3P0C2J1 YNR025CYNR025C 360 nt-2.43□□□□□ -2.8
TY1B-PR3P0C2J1 snR80snR80 171 nt-2.46□□□□□ -2.8
TY1B-PR3P0C2J1 ATP19YOL077W-A 207 nt-2.46□□□□□ -2.8
TY1B-PR3P0C2J1 YPR012WYPR012W 255 nt-2.46□□□□□ -2.8
TY1B-PR3P0C2J1 YKL106C-AYKL106C-A 120 nt-2.5□□□□□ -2.81
TY1B-PR3P0C2J1 RPL41AYDL184C 78 nt-2.52□□□□□ -2.81
TY1B-PR3P0C2J1 YJL150WYJL150W 303 nt-2.54□□□□□ -2.82
TY1B-PR3P0C2J1 YPL038W-AYPL038W-A 192 nt-2.54□□□□□ -2.82
TY1B-PR3P0C2J1 snR48snR48 113 nt-2.56□□□□□ -2.82
TY1B-PR3P0C2J1 snR6snR6 112 nt-2.58□□□□□ -2.82
TY1B-PR3P0C2J1 YGL188C-AYGL188C-A 141 nt-2.59□□□□□ -2.82
TY1B-PR3P0C2J1 YNL198CYNL198C 303 nt-2.6□□□□□ -2.83
TY1B-PR3P0C2J1 YOL155W-AYOL155W-A 135 nt-2.6□□□□□ -2.83
TY1B-PR3P0C2J1 YNL097C-BYNL097C-B 123 nt-2.61□□□□□ -2.83
TY1B-PR3P0C2J1 tL(UAA)QtL(UAA)Q 85 nt-2.62□□□□□ -2.83
TY1B-PR3P0C2J1 tR(UCU)Q1tR(UCU)Q1 73 nt-2.66□□□□□ -2.83
TY1B-PR3P0C2J1 snR38snR38 95 nt-2.66□□□□□ -2.83
TY1B-PR3P0C2J1 GIM4YEL003W 336 nt-2.66□□□□□ -2.84
TY1B-PR3P0C2J1 YBR296C-AYBR296C-A 120 nt-2.67□□□□□ -2.84
TY1B-PR3P0C2J1 YBR109W-AYBR109W-A 225 nt-2.69□□□□□ -2.84
TY1B-PR3P0C2J1 YOR335W-AYOR335W-A 81 nt-2.72□□□□□ -2.85
TY1B-PR3P0C2J1 snR56snR56 88 nt-2.73□□□□□ -2.85
TY1B-PR3P0C2J1 YDR524C-AYDR524C-A 120 nt-2.73□□□□□ -2.85
TY1B-PR3P0C2J1 RPL39YJL189W 156 nt-2.74□□□□□ -2.85
TY1B-PR3P0C2J1 YJR162CYJR162C 351 nt-2.74□□□□□ -2.85
TY1B-PR3P0C2J1 YNL337WYNL337W 255 nt-2.74□□□□□ -2.85
TY1B-PR3P0C2J1 snR73snR73 106 nt-2.74□□□□□ -2.85
TY1B-PR3P0C2J1 YOR302WYOR302W 78 nt-2.74□□□□□ -2.85
TY1B-PR3P0C2J1 RPL41BYDL133C-A 78 nt-2.78□□□□□ -2.85
TY1B-PR3P0C2J1 YDR406W-AYDR406W-A 246 nt-2.82□□□□□ -2.86
TY1B-PR3P0C2J1 YNL277W-AYNL277W-A 189 nt-2.85□□□□□ -2.87
TY1B-PR3P0C2J1 snR52snR52 92 nt-2.87□□□□□ -2.87
TY1B-PR3P0C2J1 YHL015W-AYHL015W-A 84 nt-2.87□□□□□ -2.87
TY1B-PR3P0C2J1 YDL240C-AYDL240C-A 138 nt-2.88□□□□□ -2.87
TY1B-PR3P0C2J1 YDR157WYDR157W 402 nt-2.92□□□□□ -2.88
TY1B-PR3P0C2J1 YEL050W-AYEL050W-A 192 nt-2.92□□□□□ -2.88
TY1B-PR3P0C2J1 SOM1YEL059C-A 225 nt-2.92□□□□□ -2.88
TY1B-PR3P0C2J1 YCR095W-AYCR095W-A 159 nt-2.93□□□□□ -2.88
TY1B-PR3P0C2J1 tV(UAC)QtV(UAC)Q 76 nt-2.96□□□□□ -2.88
TY1B-PR3P0C2J1 YBL071C-BYBL071C-B 99 nt-2.99□□□□□ -2.89
TY1B-PR3P0C2J1 snR47snR47 99 nt-3.01□□□□□ -2.89
TY1B-PR3P0C2J1 YDL114W-AYDL114W-A 114 nt-3.02□□□□□ -2.89
TY1B-PR3P0C2J1 YGR151CYGR151C 336 nt-3.02□□□□□ -2.89
TY1B-PR3P0C2J1 YOL164W-AYOL164W-A 183 nt-3.05□□□□□ -2.9
TY1B-PR3P0C2J1 snR85snR85 171 nt-3.06□□□□□ -2.9
TY1B-PR3P0C2J1 snR87snR87 109 nt-3.19□□□□□ -2.92
TY1B-PR3P0C2J1 YPL152W-AYPL152W-A 99 nt-3.23□□□□□ -2.93
TY1B-PR3P0C2J1 YBL053WYBL053W 375 nt-3.24□□□□□ -2.93
TY1B-PR3P0C2J1 YDR118W-AYDR118W-A 117 nt-3.27□□□□□ -2.93
TY1B-PR3P0C2J1 YAL037C-AYAL037C-A 93 nt-3.28□□□□□ -2.93
TY1B-PR3P0C2J1 snR65snR65 100 nt-3.28□□□□□ -2.93
TY1B-PR3P0C2J1 YKL225WYKL225W 348 nt-3.28□□□□□ -2.93
TY1B-PR3P0C2J1 snR58snR58 96 nt-3.3□□□□□ -2.94
TY1B-PR3P0C2J1 tS(GCU)Q1tS(GCU)Q1 86 nt-3.32□□□□□ -2.94
TY1B-PR3P0C2J1 Q0017Q0017 162 nt-3.34□□□□□ -2.94
TY1B-PR3P0C2J1 YHR175W-AYHR175W-A 150 nt-3.35□□□□□ -2.95
TY1B-PR3P0C2J1 YBL100W-CYBL100W-C 120 nt-3.37□□□□□ -2.95
TY1B-PR3P0C2J1 SPG3YDR504C 384 nt-3.43□□□□□ -2.96
TY1B-PR3P0C2J1 YGR122C-AYGR122C-A 129 nt-3.48□□□□□ -2.97
TY1B-PR3P0C2J1 YDL159W-AYDL159W-A 132 nt-3.51□□□□□ -2.97
TY1B-PR3P0C2J1 YKL096C-BYKL096C-B 150 nt-3.53□□□□□ -2.98
TY1B-PR3P0C2J1 VAR1Q0140 1197 nt-3.58□□□□□ -2.98
TY1B-PR3P0C2J1 YDR034C-AYDR034C-A 177 nt-3.73□□□□□ -3.01
TY1B-PR3P0C2J1 YJL136W-AYJL136W-A 84 nt-3.75□□□□□ -3.01
TY1B-PR3P0C2J1 YOR231C-AYOR231C-A 201 nt-3.76□□□□□ -3.01
TY1B-PR3P0C2J1 YCL001W-BYCL001W-B 255 nt-3.81□□□□□ -3.02
Retrieved 100 of 7,029 protein–RNA pairs in 27.5 ms