Protein–RNA interactions for Protein: Q06688

BER1, SRR1-like protein BER1, yeast

Known RBP Predictions only

Length 274 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
BER1	Q06688	YKU70	YMR284W	1809 nt		0.03	□□□□□ -2.4
BER1	Q06688	YDR366C	YDR366C	399 nt		0.01	□□□□□ -2.41
BER1	Q06688	YEL073C	YEL073C	324 nt		0.01	□□□□□ -2.41
BER1	Q06688	YDR183C-A	YDR183C-A	258 nt		0	□□□□□ -2.41
BER1	Q06688	YNL028W	YNL028W	318 nt		-0.01	□□□□□ -2.41
BER1	Q06688	STF2	YGR008C	255 nt		-0.02	□□□□□ -2.41
BER1	Q06688	YMR193C-A	YMR193C-A	387 nt		-0.03	□□□□□ -2.41
BER1	Q06688	YOR072W-B	YOR072W-B	162 nt		-0.03	□□□□□ -2.41
BER1	Q06688	YPR170W-A	YPR170W-A	186 nt		-0.03	□□□□□ -2.41
BER1	Q06688	SOV1	YMR066W	2697 nt		-0.04	□□□□□ -2.42
BER1	Q06688	YER053C-A	YER053C-A	114 nt		-0.04	□□□□□ -2.42
BER1	Q06688	YGL149W	YGL149W	306 nt		-0.04	□□□□□ -2.42
BER1	Q06688	YOR015W	YOR015W	360 nt		-0.04	□□□□□ -2.42
BER1	Q06688	YPL038W-A	YPL038W-A	192 nt		-0.04	□□□□□ -2.42
BER1	Q06688	tF(GAA)B	tF(GAA)B	73 nt		-0.05	□□□□□ -2.42
BER1	Q06688	tF(GAA)F	tF(GAA)F	73 nt		-0.05	□□□□□ -2.42
BER1	Q06688	tF(GAA)G	tF(GAA)G	73 nt		-0.05	□□□□□ -2.42
BER1	Q06688	tF(GAA)H1	tF(GAA)H1	73 nt		-0.05	□□□□□ -2.42
BER1	Q06688	tF(GAA)H2	tF(GAA)H2	73 nt		-0.05	□□□□□ -2.42
BER1	Q06688	tF(GAA)M	tF(GAA)M	73 nt		-0.05	□□□□□ -2.42
BER1	Q06688	tF(GAA)P1	tF(GAA)P1	73 nt		-0.05	□□□□□ -2.42
BER1	Q06688	tF(GAA)P2	tF(GAA)P2	73 nt		-0.05	□□□□□ -2.42
BER1	Q06688	YFL019C	YFL019C	354 nt		-0.05	□□□□□ -2.42
BER1	Q06688	YPR012W	YPR012W	255 nt		-0.05	□□□□□ -2.42
BER1	Q06688	YPR197C	YPR197C	564 nt		-0.05	□□□□□ -2.42
BER1	Q06688	snR36	snR36	182 nt		-0.05	□□□□□ -2.42
BER1	Q06688	THO2	YNL139C	4794 nt		-0.06	□□□□□ -2.42
BER1	Q06688	YBR072C-A	YBR072C-A	162 nt		-0.06	□□□□□ -2.42
BER1	Q06688	YLR120W-A	YLR120W-A	102 nt		-0.08	□□□□□ -2.42
BER1	Q06688	ATP6	Q0085	780 nt		-0.09	□□□□□ -2.42
BER1	Q06688	HUG1	YML058W-A	207 nt		-0.09	□□□□□ -2.42
BER1	Q06688	HMRA1	YCR097W	381 nt		-0.12	□□□□□ -2.43
BER1	Q06688	YMR158W-B	YMR158W-B	321 nt		-0.12	□□□□□ -2.43
BER1	Q06688	YDL240C-A	YDL240C-A	138 nt		-0.13	□□□□□ -2.43
BER1	Q06688	YFL032W	YFL032W	321 nt		-0.13	□□□□□ -2.43
BER1	Q06688	YLR232W	YLR232W	348 nt		-0.13	□□□□□ -2.43
BER1	Q06688	snR74	snR74	88 nt		-0.14	□□□□□ -2.43
BER1	Q06688	YIL002W-A	YIL002W-A	210 nt		-0.14	□□□□□ -2.43
BER1	Q06688	YCR038W-A	YCR038W-A	126 nt		-0.16	□□□□□ -2.44
BER1	Q06688	YER078W-A	YER078W-A	165 nt		-0.16	□□□□□ -2.44
BER1	Q06688	GLG1	YKR058W	1851 nt		-0.16	□□□□□ -2.44
BER1	Q06688	YMR172C-A	YMR172C-A	384 nt		-0.17	□□□□□ -2.44
BER1	Q06688	RAD61	YDR014W	1944 nt		-0.17	□□□□□ -2.44
BER1	Q06688	YOL014W	YOL014W	375 nt		-0.18	□□□□□ -2.44
BER1	Q06688	YBR099C	YBR099C	384 nt		-0.18	□□□□□ -2.44
BER1	Q06688	snR45	snR45	172 nt		-0.18	□□□□□ -2.44
BER1	Q06688	SDH6	YDR379C-A	240 nt		-0.19	□□□□□ -2.44
BER1	Q06688	YGL052W	YGL052W	306 nt		-0.19	□□□□□ -2.44
BER1	Q06688	snR128	snR128	126 nt		-0.2	□□□□□ -2.44
BER1	Q06688	CSE1	YGL238W	2883 nt		-0.21	□□□□□ -2.44
BER1	Q06688	APQ12	YIL040W	417 nt		-0.21	□□□□□ -2.44
BER1	Q06688	snR8	snR8	190 nt		-0.22	□□□□□ -2.44
BER1	Q06688	YDR413C	YDR413C	576 nt		-0.22	□□□□□ -2.44
BER1	Q06688	RPL39	YJL189W	156 nt		-0.22	□□□□□ -2.44
BER1	Q06688	YKL118W	YKL118W	312 nt		-0.22	□□□□□ -2.44
BER1	Q06688	UTP8	YGR128C	2142 nt		-0.22	□□□□□ -2.44
BER1	Q06688	YER097W	YER097W	330 nt		-0.23	□□□□□ -2.45
BER1	Q06688	YOR008C-A	YOR008C-A	225 nt		-0.26	□□□□□ -2.45
BER1	Q06688	TAH1	YCR060W	336 nt		-0.27	□□□□□ -2.45
BER1	Q06688	EST1	YLR233C	2100 nt		-0.27	□□□□□ -2.45
BER1	Q06688	YDR544C	YDR544C	429 nt		-0.29	□□□□□ -2.46
BER1	Q06688	YIR030W-A	YIR030W-A	384 nt		-0.29	□□□□□ -2.46
BER1	Q06688	GIM4	YEL003W	336 nt		-0.3	□□□□□ -2.46
BER1	Q06688	PRP39	YML046W	1890 nt		-0.31	□□□□□ -2.46
BER1	Q06688	COG6	YNL041C	2520 nt		-0.32	□□□□□ -2.46
BER1	Q06688	QCR9	YGR183C	201 nt		-0.33	□□□□□ -2.46
BER1	Q06688	YBL039C-A	YBL039C-A	84 nt		-0.35	□□□□□ -2.47
BER1	Q06688	YNL277W-A	YNL277W-A	189 nt		-0.35	□□□□□ -2.47
BER1	Q06688	YDR210W	YDR210W	228 nt		-0.36	□□□□□ -2.47
BER1	Q06688	YBR182C-A	YBR182C-A	195 nt		-0.37	□□□□□ -2.47
BER1	Q06688	RPM2	YML091C	3609 nt		-0.37	□□□□□ -2.47
BER1	Q06688	YPL060C-A	YPL060C-A	3315 nt		-0.39	□□□□□ -2.47
BER1	Q06688	TFB5	YDR079C-A	219 nt		-0.4	□□□□□ -2.47
BER1	Q06688	tF(GAA)Q	tF(GAA)Q	75 nt		-0.4	□□□□□ -2.47
BER1	Q06688	SBH2	YER019C-A	267 nt		-0.4	□□□□□ -2.47
BER1	Q06688	YOR314W-A	YOR314W-A	111 nt		-0.41	□□□□□ -2.48
BER1	Q06688	YGL041C	YGL041C	204 nt		-0.42	□□□□□ -2.48
BER1	Q06688	YHR175W-A	YHR175W-A	150 nt		-0.44	□□□□□ -2.48
BER1	Q06688	YGL182C	YGL182C	324 nt		-0.45	□□□□□ -2.48
BER1	Q06688	YGR164W	YGR164W	336 nt		-0.46	□□□□□ -2.48
BER1	Q06688	YML099W-A	YML099W-A	330 nt		-0.46	□□□□□ -2.48
BER1	Q06688	YER181C	YER181C	324 nt		-0.47	□□□□□ -2.48
BER1	Q06688	YPR010C-A	YPR010C-A	219 nt		-0.47	□□□□□ -2.48
BER1	Q06688	snR56	snR56	88 nt		-0.51	□□□□□ -2.49
BER1	Q06688	SEC10	YLR166C	2616 nt		-0.52	□□□□□ -2.49
BER1	Q06688	snR55	snR55	98 nt		-0.52	□□□□□ -2.49
BER1	Q06688	YBR131C-A	YBR131C-A	90 nt		-0.52	□□□□□ -2.49
BER1	Q06688	tR(ACG)Q2	tR(ACG)Q2	74 nt		-0.53	□□□□□ -2.49
BER1	Q06688	snR46	snR46	197 nt		-0.53	□□□□□ -2.49
BER1	Q06688	YEL014C	YEL014C	306 nt		-0.54	□□□□□ -2.5
BER1	Q06688	snR49	snR49	165 nt		-0.54	□□□□□ -2.5
BER1	Q06688	URB1	YKL014C	5295 nt		-0.54	□□□□□ -2.5
BER1	Q06688	snR65	snR65	100 nt		-0.56	□□□□□ -2.5
BER1	Q06688	YJL182C	YJL182C	318 nt		-0.56	□□□□□ -2.5
BER1	Q06688	YOR381W-A	YOR381W-A	168 nt		-0.58	□□□□□ -2.5
BER1	Q06688	YJL077W-A	YJL077W-A	87 nt		-0.59	□□□□□ -2.5
BER1	Q06688	YML100W-A	YML100W-A	174 nt		-0.6	□□□□□ -2.51
BER1	Q06688	YIL071W-A	YIL071W-A	477 nt		-0.62	□□□□□ -2.51
BER1	Q06688	YNL097C-B	YNL097C-B	123 nt		-0.63	□□□□□ -2.51
BER1	Q06688	YOL155W-A	YOL155W-A	135 nt		-0.63	□□□□□ -2.51

Retrieved 100 of 7,029 protein–RNA pairs in 33.6 ms