Protein–RNA interactions for Protein: P40968

CDC40, Pre-mRNA-processing factor 17, yeastyeast

Predicted RBP Predictions only

Length 455 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC40P40968 YLL019W-AYLL019W-A 93 nt0.11□□□□□ -2.39
CDC40P40968 YAF9YNL107W 681 nt0.11□□□□□ -2.39
CDC40P40968 YHR131W-AYHR131W-A 246 nt0.1□□□□□ -2.39
CDC40P40968 YOR186C-AYOR186C-A 210 nt0.1□□□□□ -2.39
CDC40P40968 RCO1YMR075W 2055 nt0.09□□□□□ -2.39
CDC40P40968 COX12YLR038C 252 nt0.09□□□□□ -2.4
CDC40P40968 PRP39YML046W 1890 nt0.08□□□□□ -2.4
CDC40P40968 HTL1YCR020W-B 237 nt0.08□□□□□ -2.4
CDC40P40968 YFL063WYFL063W 456 nt0.07□□□□□ -2.4
CDC40P40968 YPL038W-AYPL038W-A 192 nt0.07□□□□□ -2.4
CDC40P40968 YPR170W-AYPR170W-A 186 nt0.07□□□□□ -2.4
CDC40P40968 YDR102CYDR102C 333 nt0.06□□□□□ -2.4
CDC40P40968 YDR366CYDR366C 399 nt0.06□□□□□ -2.4
CDC40P40968 SNU13YEL026W 381 nt0.06□□□□□ -2.4
CDC40P40968 BUL2YML111W 2763 nt0.05□□□□□ -2.4
CDC40P40968 YGL149WYGL149W 306 nt0.05□□□□□ -2.4
CDC40P40968 YOR072W-BYOR072W-B 162 nt0.05□□□□□ -2.4
CDC40P40968 YNL028WYNL028W 318 nt0.04□□□□□ -2.4
CDC40P40968 snR36snR36 182 nt0.04□□□□□ -2.4
CDC40P40968 YDR118W-AYDR118W-A 117 nt0.03□□□□□ -2.4
CDC40P40968 YMR193C-AYMR193C-A 387 nt0.03□□□□□ -2.4
CDC40P40968 YPR197CYPR197C 564 nt0.03□□□□□ -2.4
CDC40P40968 YKU70YMR284W 1809 nt0.01□□□□□ -2.41
CDC40P40968 YLR041WYLR041W 321 nt0□□□□□ -2.41
CDC40P40968 YBR072C-AYBR072C-A 162 nt0□□□□□ -2.41
CDC40P40968 snR45snR45 172 nt-0.01□□□□□ -2.41
CDC40P40968 YGR069WYGR069W 336 nt-0.02□□□□□ -2.41
CDC40P40968 YEL073CYEL073C 324 nt-0.03□□□□□ -2.41
CDC40P40968 YER053C-AYER053C-A 114 nt-0.03□□□□□ -2.41
CDC40P40968 YDR183C-AYDR183C-A 258 nt-0.04□□□□□ -2.42
CDC40P40968 YFL019CYFL019C 354 nt-0.04□□□□□ -2.42
CDC40P40968 UTP8YGR128C 2142 nt-0.04□□□□□ -2.42
CDC40P40968 CSE1YGL238W 2883 nt-0.05□□□□□ -2.42
CDC40P40968 YPR012WYPR012W 255 nt-0.06□□□□□ -2.42
CDC40P40968 YLR232WYLR232W 348 nt-0.07□□□□□ -2.42
CDC40P40968 YOR015WYOR015W 360 nt-0.07□□□□□ -2.42
CDC40P40968 SOV1YMR066W 2697 nt-0.08□□□□□ -2.42
CDC40P40968 YFL032WYFL032W 321 nt-0.08□□□□□ -2.42
CDC40P40968 YMR158W-BYMR158W-B 321 nt-0.09□□□□□ -2.42
CDC40P40968 YCR038W-AYCR038W-A 126 nt-0.1□□□□□ -2.43
CDC40P40968 YLR120W-AYLR120W-A 102 nt-0.1□□□□□ -2.43
CDC40P40968 YDL240C-AYDL240C-A 138 nt-0.11□□□□□ -2.43
CDC40P40968 ATP6Q0085 780 nt-0.11□□□□□ -2.43
CDC40P40968 YDR210WYDR210W 228 nt-0.13□□□□□ -2.43
CDC40P40968 RAD61YDR014W 1944 nt-0.13□□□□□ -2.43
CDC40P40968 snR74snR74 88 nt-0.14□□□□□ -2.43
CDC40P40968 YIL002W-AYIL002W-A 210 nt-0.14□□□□□ -2.43
CDC40P40968 snR128snR128 126 nt-0.14□□□□□ -2.43
CDC40P40968 HMRA1YCR097W 381 nt-0.15□□□□□ -2.43
CDC40P40968 TFB5YDR079C-A 219 nt-0.15□□□□□ -2.43
CDC40P40968 YDR413CYDR413C 576 nt-0.15□□□□□ -2.43
CDC40P40968 GLG1YKR058W 1851 nt-0.16□□□□□ -2.43
CDC40P40968 YGL052WYGL052W 306 nt-0.16□□□□□ -2.44
CDC40P40968 SDH6YDR379C-A 240 nt-0.17□□□□□ -2.44
CDC40P40968 APQ12YIL040W 417 nt-0.17□□□□□ -2.44
CDC40P40968 RPL39YJL189W 156 nt-0.19□□□□□ -2.44
CDC40P40968 YKL118WYKL118W 312 nt-0.19□□□□□ -2.44
CDC40P40968 YBR099CYBR099C 384 nt-0.19□□□□□ -2.44
CDC40P40968 YDR544CYDR544C 429 nt-0.2□□□□□ -2.44
CDC40P40968 snR8snR8 190 nt-0.21□□□□□ -2.44
CDC40P40968 YMR172C-AYMR172C-A 384 nt-0.21□□□□□ -2.44
CDC40P40968 snR46snR46 197 nt-0.21□□□□□ -2.44
CDC40P40968 YER097WYER097W 330 nt-0.22□□□□□ -2.44
CDC40P40968 TAH1YCR060W 336 nt-0.23□□□□□ -2.45
CDC40P40968 YOR008C-AYOR008C-A 225 nt-0.24□□□□□ -2.45
CDC40P40968 EST1YLR233C 2100 nt-0.25□□□□□ -2.45
CDC40P40968 YGR164WYGR164W 336 nt-0.25□□□□□ -2.45
CDC40P40968 GIM4YEL003W 336 nt-0.28□□□□□ -2.45
CDC40P40968 COG6YNL041C 2520 nt-0.31□□□□□ -2.46
CDC40P40968 SBH2YER019C-A 267 nt-0.31□□□□□ -2.46
CDC40P40968 YIR030W-AYIR030W-A 384 nt-0.32□□□□□ -2.46
CDC40P40968 YHR175W-AYHR175W-A 150 nt-0.34□□□□□ -2.46
CDC40P40968 YBR182C-AYBR182C-A 195 nt-0.34□□□□□ -2.46
CDC40P40968 YGL041CYGL041C 204 nt-0.36□□□□□ -2.47
CDC40P40968 YNL277W-AYNL277W-A 189 nt-0.36□□□□□ -2.47
CDC40P40968 YBL039C-AYBL039C-A 84 nt-0.37□□□□□ -2.47
CDC40P40968 SEC10YLR166C 2616 nt-0.41□□□□□ -2.47
CDC40P40968 YJL113WYJL113W 4647 nt-0.41□□□□□ -2.48
CDC40P40968 RPM2YML091C 3609 nt-0.42□□□□□ -2.48
CDC40P40968 snR56snR56 88 nt-0.42□□□□□ -2.48
CDC40P40968 YML099W-AYML099W-A 330 nt-0.43□□□□□ -2.48
CDC40P40968 YGL182CYGL182C 324 nt-0.44□□□□□ -2.48
CDC40P40968 YOR314W-AYOR314W-A 111 nt-0.44□□□□□ -2.48
CDC40P40968 snR55snR55 98 nt-0.45□□□□□ -2.48
CDC40P40968 tF(GAA)QtF(GAA)Q 75 nt-0.45□□□□□ -2.48
CDC40P40968 tR(ACG)Q2tR(ACG)Q2 74 nt-0.47□□□□□ -2.48
CDC40P40968 YBR131C-AYBR131C-A 90 nt-0.48□□□□□ -2.49
CDC40P40968 YPR010C-AYPR010C-A 219 nt-0.49□□□□□ -2.49
CDC40P40968 YEL014CYEL014C 306 nt-0.5□□□□□ -2.49
CDC40P40968 YER181CYER181C 324 nt-0.5□□□□□ -2.49
CDC40P40968 snR49snR49 165 nt-0.5□□□□□ -2.49
CDC40P40968 YPL060C-AYPL060C-A 3315 nt-0.53□□□□□ -2.49
CDC40P40968 YJL182CYJL182C 318 nt-0.54□□□□□ -2.5
CDC40P40968 YNL067W-BYNL067W-B 141 nt-0.54□□□□□ -2.5
CDC40P40968 URB1YKL014C 5295 nt-0.55□□□□□ -2.5
CDC40P40968 snR65snR65 100 nt-0.56□□□□□ -2.5
CDC40P40968 YIL071W-AYIL071W-A 477 nt-0.57□□□□□ -2.5
CDC40P40968 tM(CAU)Q2tM(CAU)Q2 78 nt-0.58□□□□□ -2.5
CDC40P40968 YJL077W-AYJL077W-A 87 nt-0.58□□□□□ -2.5
CDC40P40968 YOR381W-AYOR381W-A 168 nt-0.58□□□□□ -2.5
Retrieved 100 of 7,029 protein–RNA pairs in 31.6 ms