Protein–RNA interactions for Protein: P38353

SSH1, Sec sixty-one protein homolog, yeastyeast

Known RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSH1P38353 YGR069WYGR069W 336 nt0.08□□□□□ -2.4
SSH1P38353 YLL006W-AYLL006W-A 177 nt0.08□□□□□ -2.4
SSH1P38353 YAF9YNL107W 681 nt0.08□□□□□ -2.4
SSH1P38353 YDR102CYDR102C 333 nt0.07□□□□□ -2.4
SSH1P38353 YHR131W-AYHR131W-A 246 nt0.07□□□□□ -2.4
SSH1P38353 YIL032CYIL032C 357 nt0.07□□□□□ -2.4
SSH1P38353 YJL197C-AYJL197C-A 282 nt0.07□□□□□ -2.4
SSH1P38353 BLI1YKL061W 342 nt0.07□□□□□ -2.4
SSH1P38353 YLL019W-AYLL019W-A 93 nt0.07□□□□□ -2.4
SSH1P38353 SOV1YMR066W 2697 nt0.05□□□□□ -2.4
SSH1P38353 COX12YLR038C 252 nt0.05□□□□□ -2.4
SSH1P38353 YOR186C-AYOR186C-A 210 nt0.04□□□□□ -2.4
SSH1P38353 UTP8YGR128C 2142 nt0.04□□□□□ -2.4
SSH1P38353 YKU70YMR284W 1809 nt0.03□□□□□ -2.4
SSH1P38353 SNU13YEL026W 381 nt0.03□□□□□ -2.4
SSH1P38353 YEL073CYEL073C 324 nt0.03□□□□□ -2.4
SSH1P38353 YKL100W-AYKL100W-A 90 nt0.03□□□□□ -2.4
SSH1P38353 YDR366CYDR366C 399 nt0.02□□□□□ -2.41
SSH1P38353 PRP39YML046W 1890 nt0.01□□□□□ -2.41
SSH1P38353 YMR193C-AYMR193C-A 387 nt0.01□□□□□ -2.41
SSH1P38353 YOR015WYOR015W 360 nt0.01□□□□□ -2.41
SSH1P38353 YPR170W-AYPR170W-A 186 nt0.01□□□□□ -2.41
SSH1P38353 snR45snR45 172 nt0.01□□□□□ -2.41
SSH1P38353 YDR183C-AYDR183C-A 258 nt0□□□□□ -2.41
SSH1P38353 YNL028WYNL028W 318 nt0□□□□□ -2.41
SSH1P38353 THO2YNL139C 4794 nt0□□□□□ -2.41
SSH1P38353 YOR072W-BYOR072W-B 162 nt0□□□□□ -2.41
SSH1P38353 snR36snR36 182 nt0□□□□□ -2.41
SSH1P38353 YER053C-AYER053C-A 114 nt-0.01□□□□□ -2.41
SSH1P38353 YGL149WYGL149W 306 nt-0.01□□□□□ -2.41
SSH1P38353 YPL038W-AYPL038W-A 192 nt-0.01□□□□□ -2.41
SSH1P38353 YPR197CYPR197C 564 nt-0.02□□□□□ -2.41
SSH1P38353 YBR072C-AYBR072C-A 162 nt-0.03□□□□□ -2.41
SSH1P38353 YFL019CYFL019C 354 nt-0.04□□□□□ -2.42
SSH1P38353 YLR120W-AYLR120W-A 102 nt-0.05□□□□□ -2.42
SSH1P38353 YPR012WYPR012W 255 nt-0.05□□□□□ -2.42
SSH1P38353 ATP6Q0085 780 nt-0.07□□□□□ -2.42
SSH1P38353 YFL032WYFL032W 321 nt-0.07□□□□□ -2.42
SSH1P38353 snR74snR74 88 nt-0.08□□□□□ -2.42
SSH1P38353 YMR158W-BYMR158W-B 321 nt-0.08□□□□□ -2.42
SSH1P38353 YCR038W-AYCR038W-A 126 nt-0.09□□□□□ -2.42
SSH1P38353 HMRA1YCR097W 381 nt-0.09□□□□□ -2.42
SSH1P38353 YLR232WYLR232W 348 nt-0.09□□□□□ -2.42
SSH1P38353 CSE1YGL238W 2883 nt-0.1□□□□□ -2.43
SSH1P38353 YDL240C-AYDL240C-A 138 nt-0.1□□□□□ -2.43
SSH1P38353 YIL002W-AYIL002W-A 210 nt-0.1□□□□□ -2.43
SSH1P38353 RAD61YDR014W 1944 nt-0.11□□□□□ -2.43
SSH1P38353 YPL060C-AYPL060C-A 3315 nt-0.12□□□□□ -2.43
SSH1P38353 GLG1YKR058W 1851 nt-0.13□□□□□ -2.43
SSH1P38353 SDH6YDR379C-A 240 nt-0.13□□□□□ -2.43
SSH1P38353 YDR413CYDR413C 576 nt-0.13□□□□□ -2.43
SSH1P38353 YGL052WYGL052W 306 nt-0.13□□□□□ -2.43
SSH1P38353 YMR172C-AYMR172C-A 384 nt-0.13□□□□□ -2.43
SSH1P38353 APQ12YIL040W 417 nt-0.14□□□□□ -2.43
SSH1P38353 snR128snR128 126 nt-0.14□□□□□ -2.43
SSH1P38353 YBR099CYBR099C 384 nt-0.15□□□□□ -2.43
SSH1P38353 YER097WYER097W 330 nt-0.16□□□□□ -2.44
SSH1P38353 YKL118WYKL118W 312 nt-0.16□□□□□ -2.44
SSH1P38353 TFB5YDR079C-A 219 nt-0.17□□□□□ -2.44
SSH1P38353 YDR544CYDR544C 429 nt-0.17□□□□□ -2.44
SSH1P38353 snR8snR8 190 nt-0.18□□□□□ -2.44
SSH1P38353 RPL39YJL189W 156 nt-0.18□□□□□ -2.44
SSH1P38353 EST1YLR233C 2100 nt-0.19□□□□□ -2.44
SSH1P38353 TAH1YCR060W 336 nt-0.19□□□□□ -2.44
SSH1P38353 YOR008C-AYOR008C-A 225 nt-0.21□□□□□ -2.44
SSH1P38353 YIR030W-AYIR030W-A 384 nt-0.23□□□□□ -2.45
SSH1P38353 COG6YNL041C 2520 nt-0.24□□□□□ -2.45
SSH1P38353 GIM4YEL003W 336 nt-0.24□□□□□ -2.45
SSH1P38353 RPM2YML091C 3609 nt-0.25□□□□□ -2.45
SSH1P38353 YGR164WYGR164W 336 nt-0.25□□□□□ -2.45
SSH1P38353 YBL039C-AYBL039C-A 84 nt-0.26□□□□□ -2.45
SSH1P38353 YNL277W-AYNL277W-A 189 nt-0.26□□□□□ -2.45
SSH1P38353 YGL041CYGL041C 204 nt-0.28□□□□□ -2.45
SSH1P38353 YBR182C-AYBR182C-A 195 nt-0.28□□□□□ -2.45
SSH1P38353 YDR210WYDR210W 228 nt-0.29□□□□□ -2.46
SSH1P38353 SBH2YER019C-A 267 nt-0.3□□□□□ -2.46
SSH1P38353 YHR175W-AYHR175W-A 150 nt-0.3□□□□□ -2.46
SSH1P38353 tF(GAA)QtF(GAA)Q 75 nt-0.32□□□□□ -2.46
SSH1P38353 YML099W-AYML099W-A 330 nt-0.33□□□□□ -2.46
SSH1P38353 YOR314W-AYOR314W-A 111 nt-0.33□□□□□ -2.46
SSH1P38353 snR46snR46 197 nt-0.33□□□□□ -2.46
SSH1P38353 YGL182CYGL182C 324 nt-0.34□□□□□ -2.46
SSH1P38353 snR56snR56 88 nt-0.35□□□□□ -2.47
SSH1P38353 YPR010C-AYPR010C-A 219 nt-0.35□□□□□ -2.47
SSH1P38353 YBR131C-AYBR131C-A 90 nt-0.36□□□□□ -2.47
SSH1P38353 tR(ACG)Q2tR(ACG)Q2 74 nt-0.37□□□□□ -2.47
SSH1P38353 snR55snR55 98 nt-0.38□□□□□ -2.47
SSH1P38353 YEL014CYEL014C 306 nt-0.38□□□□□ -2.47
SSH1P38353 YER181CYER181C 324 nt-0.38□□□□□ -2.47
SSH1P38353 YJL182CYJL182C 318 nt-0.41□□□□□ -2.48
SSH1P38353 snR49snR49 165 nt-0.41□□□□□ -2.48
SSH1P38353 snR65snR65 100 nt-0.44□□□□□ -2.48
SSH1P38353 YOR381W-AYOR381W-A 168 nt-0.44□□□□□ -2.48
SSH1P38353 YIL071W-AYIL071W-A 477 nt-0.47□□□□□ -2.48
SSH1P38353 YJL077W-AYJL077W-A 87 nt-0.47□□□□□ -2.48
SSH1P38353 YOL155W-AYOL155W-A 135 nt-0.47□□□□□ -2.48
SSH1P38353 YNL097C-BYNL097C-B 123 nt-0.48□□□□□ -2.49
SSH1P38353 YPL152W-AYPL152W-A 99 nt-0.48□□□□□ -2.49
SSH1P38353 SEC10YLR166C 2616 nt-0.48□□□□□ -2.49
SSH1P38353 tM(CAU)Q2tM(CAU)Q2 78 nt-0.49□□□□□ -2.49
Retrieved 100 of 7,029 protein–RNA pairs in 51.3 ms