Protein–RNA interactions for Protein: P33400

RIM101, pH-response transcription factor pacC/RIM101, yeastyeast

Predictions only

Length 625 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RIM101P33400 snR14snR14 160 nt2.97□□□□□ -1.93
RIM101P33400 GEA2YEL022W 4380 nt2.96□□□□□ -1.93
RIM101P33400 ECM29YHL030W 5607 nt2.96□□□□□ -1.94
RIM101P33400 YIL169CYIL169C 2988 nt2.96□□□□□ -1.94
RIM101P33400 ESC1YMR219W 4977 nt2.95□□□□□ -1.94
RIM101P33400 RDS3YPR094W 324 nt2.95□□□□□ -1.94
RIM101P33400 NIP1YMR309C 2439 nt2.95□□□□□ -1.94
RIM101P33400 SAC3YDR159W 3906 nt2.95□□□□□ -1.94
RIM101P33400 SEC8YPR055W 3198 nt2.94□□□□□ -1.94
RIM101P33400 MYO4YAL029C 4416 nt2.94□□□□□ -1.94
RIM101P33400 NUM1YDR150W 8247 nt2.93□□□□□ -1.94
RIM101P33400 PSD2YGR170W 3417 nt2.93□□□□□ -1.94
RIM101P33400 SMC4YLR086W 4257 nt2.93□□□□□ -1.94
RIM101P33400 SPF1YEL031W 3648 nt2.92□□□□□ -1.94
RIM101P33400 ULP2YIL031W 3105 nt2.92□□□□□ -1.94
RIM101P33400 YSP1YHR155W 3687 nt2.91□□□□□ -1.94
RIM101P33400 PKH3YDR466W 2697 nt2.9□□□□□ -1.94
RIM101P33400 CDC25YLR310C 4770 nt2.89□□□□□ -1.95
RIM101P33400 UTP22YGR090W 3714 nt2.89□□□□□ -1.95
RIM101P33400 TFC3YAL001C 3483 nt2.88□□□□□ -1.95
RIM101P33400 CSE1YGL238W 2883 nt2.88□□□□□ -1.95
RIM101P33400 KAP122YGL016W 3246 nt2.88□□□□□ -1.95
RIM101P33400 APL3YBL037W 3078 nt2.87□□□□□ -1.95
RIM101P33400 SCD5YOR329C 2619 nt2.87□□□□□ -1.95
RIM101P33400 YLR399W-AYLR399W-A 105 nt2.86□□□□□ -1.95
RIM101P33400 SIR4YDR227W 4077 nt2.85□□□□□ -1.95
RIM101P33400 AXL1YPR122W 3627 nt2.84□□□□□ -1.95
RIM101P33400 tN(GUU)QtN(GUU)Q 71 nt2.84□□□□□ -1.95
RIM101P33400 YOR055WYOR055W 435 nt2.83□□□□□ -1.96
RIM101P33400 RGC1YPR115W 3252 nt2.81□□□□□ -1.96
RIM101P33400 INO80YGL150C 4470 nt2.81□□□□□ -1.96
RIM101P33400 HUG1YML058W-A 207 nt2.8□□□□□ -1.96
RIM101P33400 YCS4YLR272C 3531 nt2.8□□□□□ -1.96
RIM101P33400 DNA2YHR164C 4569 nt2.8□□□□□ -1.96
RIM101P33400 UBR2YLR024C 5619 nt2.79□□□□□ -1.96
RIM101P33400 BPH1YCR032W 6504 nt2.79□□□□□ -1.96
RIM101P33400 PET111YMR257C 2403 nt2.78□□□□□ -1.96
RIM101P33400 IRA2YOL081W 9240 nt2.78□□□□□ -1.96
RIM101P33400 MSN5YDR335W 3675 nt2.76□□□□□ -1.97
RIM101P33400 SEC3YER008C 4011 nt2.76□□□□□ -1.97
RIM101P33400 YJL077W-AYJL077W-A 87 nt2.75□□□□□ -1.97
RIM101P33400 YPL216WYPL216W 3309 nt2.74□□□□□ -1.97
RIM101P33400 SKI3YPR189W 4299 nt2.74□□□□□ -1.97
RIM101P33400 YLR419WYLR419W 4308 nt2.72□□□□□ -1.97
RIM101P33400 IRC20YLR247C 4671 nt2.72□□□□□ -1.97
RIM101P33400 MSH3YCR092C 3057 nt2.71□□□□□ -1.98
RIM101P33400 UBP2YOR124C 3819 nt2.7□□□□□ -1.98
RIM101P33400 NST1YNL091W 3723 nt2.7□□□□□ -1.98
RIM101P33400 PDR1YGL013C 3207 nt2.68□□□□□ -1.98
RIM101P33400 SIP4YJL089W 2490 nt2.68□□□□□ -1.98
RIM101P33400 KCS1YDR017C 3153 nt2.67□□□□□ -1.98
RIM101P33400 PAU12YGR294W 363 nt2.66□□□□□ -1.98
RIM101P33400 CAT8YMR280C 4302 nt2.66□□□□□ -1.98
RIM101P33400 EST2YLR318W 2655 nt2.65□□□□□ -1.98
RIM101P33400 SGS1YMR190C 4344 nt2.64□□□□□ -1.99
RIM101P33400 snR70snR70 164 nt2.64□□□□□ -1.99
RIM101P33400 SWI4YER111C 3282 nt2.63□□□□□ -1.99
RIM101P33400 BUL2YML111W 2763 nt2.62□□□□□ -1.99
RIM101P33400 NUP145YGL092W 3954 nt2.61□□□□□ -1.99
RIM101P33400 FYV8YGR196C 2454 nt2.6□□□□□ -1.99
RIM101P33400 tQ(UUG)QtQ(UUG)Q 76 nt2.6□□□□□ -1.99
RIM101P33400 ATG9YDL149W 2994 nt2.59□□□□□ -2
RIM101P33400 DNF1YER166W 4716 nt2.58□□□□□ -2
RIM101P33400 SEC31YDL195W 3822 nt2.57□□□□□ -2
RIM101P33400 YOL098CYOL098C 3114 nt2.57□□□□□ -2
RIM101P33400 MSB1YOR188W 3414 nt2.56□□□□□ -2
RIM101P33400 USO1YDL058W 5373 nt2.55□□□□□ -2
RIM101P33400 YPL060C-AYPL060C-A 3315 nt2.54□□□□□ -2
RIM101P33400 tW(CCA)G1tW(CCA)G1 72 nt2.53□□□□□ -2
RIM101P33400 tW(CCA)G2tW(CCA)G2 72 nt2.53□□□□□ -2
RIM101P33400 tW(CCA)JtW(CCA)J 72 nt2.53□□□□□ -2
RIM101P33400 tW(CCA)KtW(CCA)K 72 nt2.53□□□□□ -2
RIM101P33400 tW(CCA)MtW(CCA)M 72 nt2.53□□□□□ -2
RIM101P33400 tW(CCA)PtW(CCA)P 72 nt2.53□□□□□ -2
RIM101P33400 PDR11YIL013C 4236 nt2.52□□□□□ -2.01
RIM101P33400 YLL006W-AYLL006W-A 177 nt2.5□□□□□ -2.01
RIM101P33400 BCK1YJL095W 4437 nt2.48□□□□□ -2.01
RIM101P33400 SEC16YPL085W 6588 nt2.47□□□□□ -2.01
RIM101P33400 FKS3YMR306W 5358 nt2.46□□□□□ -2.02
RIM101P33400 YMR045CYMR045C 5268 nt2.46□□□□□ -2.02
RIM101P33400 BNI1YNL271C 5862 nt2.42□□□□□ -2.02
RIM101P33400 MON2YNL297C 4911 nt2.42□□□□□ -2.02
RIM101P33400 YER090C-AYER090C-A 90 nt2.4□□□□□ -2.03
RIM101P33400 YHR180W-AYHR180W-A 183 nt2.4□□□□□ -2.03
RIM101P33400 SPP41YDR464W 4308 nt2.4□□□□□ -2.03
RIM101P33400 NUP188YML103C 4968 nt2.39□□□□□ -2.03
RIM101P33400 PMD1YER132C 5262 nt2.38□□□□□ -2.03
RIM101P33400 TOR2YKL203C 7425 nt2.38□□□□□ -2.03
RIM101P33400 REV3YPL167C 4515 nt2.36□□□□□ -2.03
RIM101P33400 NEO1YIL048W 3456 nt2.36□□□□□ -2.03
RIM101P33400 TMA7YLR262C-A 195 nt2.35□□□□□ -2.03
RIM101P33400 VPS13YLL040C 9435 nt2.34□□□□□ -2.03
RIM101P33400 BST1YFL025C 3090 nt2.34□□□□□ -2.03
RIM101P33400 CSF1YLR087C 8877 nt2.34□□□□□ -2.03
RIM101P33400 YHR214C-BYHR214C-B 5382 nt2.34□□□□□ -2.04
RIM101P33400 YOR376W-AYOR376W-A 156 nt2.33□□□□□ -2.04
RIM101P33400 YDL114W-AYDL114W-A 114 nt2.31□□□□□ -2.04
RIM101P33400 DGR1YNL130C-A 147 nt2.31□□□□□ -2.04
RIM101P33400 NUP170YBL079W 4509 nt2.3□□□□□ -2.04
RIM101P33400 TRM732YMR259C 4263 nt2.3□□□□□ -2.04
Retrieved 100 of 7,029 protein–RNA pairs in 13.4 ms