Protein–RNA interactions for Protein: P25336

MSH3, DNA mismatch repair protein MSH3, yeastyeast

Predictions only

Length 1,018 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH3P25336 RPL26BYGR034W 384 nt1.81□□□□□ -2.12
MSH3P25336 YLR232WYLR232W 348 nt1.81□□□□□ -2.12
MSH3P25336 BPH1YCR032W 6504 nt1.81□□□□□ -2.12
MSH3P25336 snR190snR190 190 nt1.8□□□□□ -2.12
MSH3P25336 CFT1YDR301W 4074 nt1.8□□□□□ -2.12
MSH3P25336 SWI4YER111C 3282 nt1.78□□□□□ -2.12
MSH3P25336 MEC1YBR136W 7107 nt1.78□□□□□ -2.12
MSH3P25336 NUP192YJL039C 5052 nt1.78□□□□□ -2.12
MSH3P25336 RPM2YML091C 3609 nt1.77□□□□□ -2.13
MSH3P25336 PET127YOR017W 2403 nt1.77□□□□□ -2.13
MSH3P25336 CHS1YNL192W 3396 nt1.77□□□□□ -2.13
MSH3P25336 MON2YNL297C 4911 nt1.77□□□□□ -2.13
MSH3P25336 FIG2YCR089W 4830 nt1.76□□□□□ -2.13
MSH3P25336 APL3YBL037W 3078 nt1.76□□□□□ -2.13
MSH3P25336 NUP157YER105C 4176 nt1.76□□□□□ -2.13
MSH3P25336 NUP145YGL092W 3954 nt1.74□□□□□ -2.13
MSH3P25336 FYV8YGR196C 2454 nt1.74□□□□□ -2.13
MSH3P25336 RAD9YDR217C 3930 nt1.74□□□□□ -2.13
MSH3P25336 YBR200W-AYBR200W-A 165 nt1.74□□□□□ -2.13
MSH3P25336 SSK2YNR031C 4740 nt1.74□□□□□ -2.13
MSH3P25336 SEC3YER008C 4011 nt1.74□□□□□ -2.13
MSH3P25336 ASE1YOR058C 2658 nt1.73□□□□□ -2.13
MSH3P25336 BST1YFL025C 3090 nt1.72□□□□□ -2.13
MSH3P25336 YDR210WYDR210W 228 nt1.72□□□□□ -2.13
MSH3P25336 GEA2YEL022W 4380 nt1.72□□□□□ -2.13
MSH3P25336 KAP120YPL125W 3099 nt1.72□□□□□ -2.13
MSH3P25336 tQ(UUG)E2tQ(UUG)E2 72 nt1.71□□□□□ -2.14
MSH3P25336 YJL127W-AYJL127W-A 117 nt1.71□□□□□ -2.14
MSH3P25336 RCO1YMR075W 2055 nt1.71□□□□□ -2.14
MSH3P25336 COG6YNL041C 2520 nt1.7□□□□□ -2.14
MSH3P25336 YGR146C-AYGR146C-A 162 nt1.68□□□□□ -2.14
MSH3P25336 ANS1YHR126C 480 nt1.68□□□□□ -2.14
MSH3P25336 CLU1YMR012W 3834 nt1.68□□□□□ -2.14
MSH3P25336 SEC8YPR055W 3198 nt1.67□□□□□ -2.14
MSH3P25336 AZF1YOR113W 2745 nt1.67□□□□□ -2.14
MSH3P25336 TRM732YMR259C 4263 nt1.66□□□□□ -2.14
MSH3P25336 BIR1YJR089W 2865 nt1.66□□□□□ -2.14
MSH3P25336 PMD1YER132C 5262 nt1.65□□□□□ -2.15
MSH3P25336 BRR2YER172C 6492 nt1.64□□□□□ -2.15
MSH3P25336 SPC110YDR356W 2835 nt1.64□□□□□ -2.15
MSH3P25336 CAT8YMR280C 4302 nt1.64□□□□□ -2.15
MSH3P25336 NUP188YML103C 4968 nt1.64□□□□□ -2.15
MSH3P25336 EST2YLR318W 2655 nt1.63□□□□□ -2.15
MSH3P25336 SEC1YDR164C 2175 nt1.62□□□□□ -2.15
MSH3P25336 YNL266WYNL266W 420 nt1.62□□□□□ -2.15
MSH3P25336 CCH1YGR217W 6120 nt1.62□□□□□ -2.15
MSH3P25336 tS(GCU)Q1tS(GCU)Q1 86 nt1.61□□□□□ -2.15
MSH3P25336 YLR399W-AYLR399W-A 105 nt1.61□□□□□ -2.15
MSH3P25336 PRP16YKR086W 3216 nt1.61□□□□□ -2.15
MSH3P25336 MSH3YCR092C 3057 nt1.61□□□□□ -2.15
MSH3P25336 SXM1YDR395W 2835 nt1.6□□□□□ -2.15
MSH3P25336 BEM3YPL115C 3387 nt1.6□□□□□ -2.15
MSH3P25336 snR81snR81 201 nt1.59□□□□□ -2.15
MSH3P25336 YIL142C-AYIL142C-A 333 nt1.59□□□□□ -2.15
MSH3P25336 YBR072C-AYBR072C-A 162 nt1.59□□□□□ -2.15
MSH3P25336 YAL037C-AYAL037C-A 93 nt1.57□□□□□ -2.16
MSH3P25336 YPR160W-AYPR160W-A 81 nt1.57□□□□□ -2.16
MSH3P25336 MSN5YDR335W 3675 nt1.57□□□□□ -2.16
MSH3P25336 YDL073WYDL073W 2955 nt1.55□□□□□ -2.16
MSH3P25336 YSP1YHR155W 3687 nt1.54□□□□□ -2.16
MSH3P25336 tN(GUU)QtN(GUU)Q 71 nt1.54□□□□□ -2.16
MSH3P25336 CDC39YCR093W 6327 nt1.53□□□□□ -2.16
MSH3P25336 HKR1YDR420W 5409 nt1.51□□□□□ -2.17
MSH3P25336 LAA1YJL207C 6045 nt1.49□□□□□ -2.17
MSH3P25336 UBP3YER151C 2739 nt1.48□□□□□ -2.17
MSH3P25336 YLL066W-BYLL066W-B 171 nt1.48□□□□□ -2.17
MSH3P25336 ULP2YIL031W 3105 nt1.46□□□□□ -2.17
MSH3P25336 GLG1YKR058W 1851 nt1.46□□□□□ -2.18
MSH3P25336 YBR196C-AYBR196C-A 150 nt1.45□□□□□ -2.18
MSH3P25336 snR45snR45 172 nt1.44□□□□□ -2.18
MSH3P25336 YOL083C-AYOL083C-A 141 nt1.43□□□□□ -2.18
MSH3P25336 NNF2YGR089W 2811 nt1.43□□□□□ -2.18
MSH3P25336 SEC10YLR166C 2616 nt1.41□□□□□ -2.18
MSH3P25336 snR62snR62 100 nt1.41□□□□□ -2.18
MSH3P25336 tH(GUG)E1tH(GUG)E1 72 nt1.39□□□□□ -2.19
MSH3P25336 tH(GUG)E2tH(GUG)E2 72 nt1.39□□□□□ -2.19
MSH3P25336 tH(GUG)G1tH(GUG)G1 72 nt1.39□□□□□ -2.19
MSH3P25336 tH(GUG)G2tH(GUG)G2 72 nt1.39□□□□□ -2.19
MSH3P25336 tH(GUG)HtH(GUG)H 72 nt1.39□□□□□ -2.19
MSH3P25336 tH(GUG)KtH(GUG)K 72 nt1.39□□□□□ -2.19
MSH3P25336 tH(GUG)MtH(GUG)M 72 nt1.39□□□□□ -2.19
MSH3P25336 YGR130CYGR130C 2451 nt1.38□□□□□ -2.19
MSH3P25336 YBL071C-BYBL071C-B 99 nt1.38□□□□□ -2.19
MSH3P25336 IML1YJR138W 4755 nt1.38□□□□□ -2.19
MSH3P25336 RPS26AYGL189C 360 nt1.33□□□□□ -2.2
MSH3P25336 SPT7YBR081C 3999 nt1.31□□□□□ -2.2
MSH3P25336 NST1YNL091W 3723 nt1.3□□□□□ -2.2
MSH3P25336 YBL100W-CYBL100W-C 120 nt1.3□□□□□ -2.2
MSH3P25336 YLR286W-AYLR286W-A 135 nt1.29□□□□□ -2.2
MSH3P25336 SCC2YDR180W 4482 nt1.28□□□□□ -2.21
MSH3P25336 tD(GUC)QtD(GUC)Q 75 nt1.27□□□□□ -2.21
MSH3P25336 YLL006W-AYLL006W-A 177 nt1.27□□□□□ -2.21
MSH3P25336 tV(UAC)BtV(UAC)B 74 nt1.26□□□□□ -2.21
MSH3P25336 tV(UAC)DtV(UAC)D 74 nt1.26□□□□□ -2.21
MSH3P25336 YOL164W-AYOL164W-A 183 nt1.26□□□□□ -2.21
MSH3P25336 HUG1YML058W-A 207 nt1.25□□□□□ -2.21
MSH3P25336 YNL284C-BYNL284C-B 5268 nt1.25□□□□□ -2.21
MSH3P25336 CSE1YGL238W 2883 nt1.25□□□□□ -2.21
MSH3P25336 snR69snR69 101 nt1.24□□□□□ -2.21
MSH3P25336 EST1YLR233C 2100 nt1.23□□□□□ -2.21
Retrieved 100 of 7,029 protein–RNA pairs in 36.7 ms