Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 tQ(UUG)E2tQ(UUG)E2 72 nt1.45□□□□□ -2.18
RPN11P43588 YMR307C-AYMR307C-A 195 nt1.45□□□□□ -2.18
RPN11P43588 GEA2YEL022W 4380 nt1.45□□□□□ -2.18
RPN11P43588 YCS4YLR272C 3531 nt1.44□□□□□ -2.18
RPN11P43588 NUP188YML103C 4968 nt1.44□□□□□ -2.18
RPN11P43588 BST1YFL025C 3090 nt1.43□□□□□ -2.18
RPN11P43588 UTP20YBL004W 7482 nt1.43□□□□□ -2.18
RPN11P43588 BUD3YCL014W 4911 nt1.43□□□□□ -2.18
RPN11P43588 CDC36YDL165W 576 nt1.43□□□□□ -2.18
RPN11P43588 VPS55YJR044C 423 nt1.43□□□□□ -2.18
RPN11P43588 AIM44YPL158C 2277 nt1.43□□□□□ -2.18
RPN11P43588 SGF11YPL047W 300 nt1.42□□□□□ -2.18
RPN11P43588 MCM10YIL150C 1716 nt1.42□□□□□ -2.18
RPN11P43588 NUT1YGL151W 3399 nt1.41□□□□□ -2.18
RPN11P43588 RPL33BYOR234C 324 nt1.41□□□□□ -2.18
RPN11P43588 tF(GAA)QtF(GAA)Q 75 nt1.4□□□□□ -2.19
RPN11P43588 KAP122YGL016W 3246 nt1.4□□□□□ -2.19
RPN11P43588 SMC1YFL008W 3678 nt1.4□□□□□ -2.19
RPN11P43588 STO1YMR125W 2586 nt1.4□□□□□ -2.19
RPN11P43588 YLL019W-AYLL019W-A 93 nt1.39□□□□□ -2.19
RPN11P43588 YOR302WYOR302W 78 nt1.39□□□□□ -2.19
RPN11P43588 YBR174CYBR174C 315 nt1.39□□□□□ -2.19
RPN11P43588 YBR221W-AYBR221W-A 105 nt1.39□□□□□ -2.19
RPN11P43588 IFH1YLR223C 3258 nt1.39□□□□□ -2.19
RPN11P43588 MMS4YBR098W 2076 nt1.39□□□□□ -2.19
RPN11P43588 JLP2YMR132C 627 nt1.38□□□□□ -2.19
RPN11P43588 AZF1YOR113W 2745 nt1.38□□□□□ -2.19
RPN11P43588 SET3YKR029C 2256 nt1.37□□□□□ -2.19
RPN11P43588 MSN5YDR335W 3675 nt1.36□□□□□ -2.19
RPN11P43588 YJR029WYJR029W 5268 nt1.36□□□□□ -2.19
RPN11P43588 YPR137C-BYPR137C-B 5268 nt1.36□□□□□ -2.19
RPN11P43588 YDR354C-AYDR354C-A 144 nt1.36□□□□□ -2.19
RPN11P43588 SPG3YDR504C 384 nt1.36□□□□□ -2.19
RPN11P43588 YOR072W-BYOR072W-B 162 nt1.35□□□□□ -2.19
RPN11P43588 YBR182C-AYBR182C-A 195 nt1.35□□□□□ -2.19
RPN11P43588 IRA1YBR140C 9279 nt1.35□□□□□ -2.19
RPN11P43588 NUP157YER105C 4176 nt1.34□□□□□ -2.19
RPN11P43588 YBR131C-AYBR131C-A 90 nt1.34□□□□□ -2.19
RPN11P43588 PET127YOR017W 2403 nt1.34□□□□□ -2.2
RPN11P43588 ROM2YLR371W 4071 nt1.33□□□□□ -2.2
RPN11P43588 YIL142C-AYIL142C-A 333 nt1.33□□□□□ -2.2
RPN11P43588 YLL020CYLL020C 306 nt1.33□□□□□ -2.2
RPN11P43588 EST2YLR318W 2655 nt1.33□□□□□ -2.2
RPN11P43588 WAR1YML076C 2835 nt1.32□□□□□ -2.2
RPN11P43588 OLI1Q0130 231 nt1.32□□□□□ -2.2
RPN11P43588 YIL020C-AYIL020C-A 339 nt1.32□□□□□ -2.2
RPN11P43588 YOR345CYOR345C 351 nt1.32□□□□□ -2.2
RPN11P43588 YKU70YMR284W 1809 nt1.31□□□□□ -2.2
RPN11P43588 APL3YBL037W 3078 nt1.31□□□□□ -2.2
RPN11P43588 DOP1YDR141C 5097 nt1.3□□□□□ -2.2
RPN11P43588 YIR030W-AYIR030W-A 384 nt1.3□□□□□ -2.2
RPN11P43588 RRT15YLR162W-A 189 nt1.3□□□□□ -2.2
RPN11P43588 SWI4YER111C 3282 nt1.29□□□□□ -2.2
RPN11P43588 UBP3YER151C 2739 nt1.29□□□□□ -2.2
RPN11P43588 YDL196WYDL196W 330 nt1.29□□□□□ -2.2
RPN11P43588 YNL211CYNL211C 261 nt1.29□□□□□ -2.2
RPN11P43588 ALY2YJL084C 3141 nt1.29□□□□□ -2.2
RPN11P43588 UTP8YGR128C 2142 nt1.27□□□□□ -2.21
RPN11P43588 BLI1YKL061W 342 nt1.26□□□□□ -2.21
RPN11P43588 YKL145W-AYKL145W-A 93 nt1.26□□□□□ -2.21
RPN11P43588 YBR200W-AYBR200W-A 165 nt1.26□□□□□ -2.21
RPN11P43588 CDC39YCR093W 6327 nt1.26□□□□□ -2.21
RPN11P43588 ULI1YFR026C 510 nt1.25□□□□□ -2.21
RPN11P43588 SEC21YNL287W 2808 nt1.24□□□□□ -2.21
RPN11P43588 YOR161W-BYOR161W-B 261 nt1.24□□□□□ -2.21
RPN11P43588 NST1YNL091W 3723 nt1.24□□□□□ -2.21
RPN11P43588 APQ12YIL040W 417 nt1.23□□□□□ -2.21
RPN11P43588 EAF1YDR359C 2949 nt1.23□□□□□ -2.21
RPN11P43588 RSM22YKL155C 1887 nt1.22□□□□□ -2.21
RPN11P43588 STB6YKL072W 2301 nt1.22□□□□□ -2.21
RPN11P43588 SPT7YBR081C 3999 nt1.22□□□□□ -2.21
RPN11P43588 YDR406W-AYDR406W-A 246 nt1.22□□□□□ -2.21
RPN11P43588 ISD11YER048W-A 285 nt1.22□□□□□ -2.21
RPN11P43588 YFR012W-AYFR012W-A 87 nt1.22□□□□□ -2.21
RPN11P43588 YJL026C-AYJL026C-A 222 nt1.22□□□□□ -2.21
RPN11P43588 YMR160WYMR160W 2451 nt1.22□□□□□ -2.21
RPN11P43588 PAN2YGL094C 3348 nt1.21□□□□□ -2.22
RPN11P43588 PAA1YDR071C 576 nt1.21□□□□□ -2.22
RPN11P43588 tM(CAU)Q1tM(CAU)Q1 76 nt1.21□□□□□ -2.22
RPN11P43588 CMC4YMR194C-B 222 nt1.21□□□□□ -2.22
RPN11P43588 TAH1YCR060W 336 nt1.2□□□□□ -2.22
RPN11P43588 YDL185C-AYDL185C-A 228 nt1.2□□□□□ -2.22
RPN11P43588 YEL014CYEL014C 306 nt1.2□□□□□ -2.22
RPN11P43588 YMR046W-AYMR046W-A 129 nt1.2□□□□□ -2.22
RPN11P43588 APL1YJR005W 2103 nt1.19□□□□□ -2.22
RPN11P43588 MYO1YHR023W 5787 nt1.19□□□□□ -2.22
RPN11P43588 YNL097C-BYNL097C-B 123 nt1.19□□□□□ -2.22
RPN11P43588 YCR038W-AYCR038W-A 126 nt1.18□□□□□ -2.22
RPN11P43588 YIL134C-AYIL134C-A 204 nt1.18□□□□□ -2.22
RPN11P43588 BIR1YJR089W 2865 nt1.18□□□□□ -2.22
RPN11P43588 COY1YKL179C 2040 nt1.18□□□□□ -2.22
RPN11P43588 YCR018C-AYCR018C-A 255 nt1.17□□□□□ -2.22
RPN11P43588 YAL067W-AYAL067W-A 228 nt1.17□□□□□ -2.22
RPN11P43588 YNL198CYNL198C 303 nt1.17□□□□□ -2.22
RPN11P43588 NOP9YJL010C 2001 nt1.16□□□□□ -2.22
RPN11P43588 snR52snR52 92 nt1.16□□□□□ -2.22
RPN11P43588 BEM2YER155C 6504 nt1.15□□□□□ -2.22
RPN11P43588 YDL073WYDL073W 2955 nt1.15□□□□□ -2.22
RPN11P43588 YOR161W-AYOR161W-A 81 nt1.15□□□□□ -2.23
RPN11P43588 YPL044CYPL044C 549 nt1.15□□□□□ -2.23
Retrieved 100 of 7,029 protein–RNA pairs in 8.5 ms