Protein–RNA interactions for Protein: P40318

SSM4, ERAD-associated E3 ubiquitin-protein ligase DOA10, yeastyeast

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSM4P40318 MDM20YOL076W 2391 nt2.02□□□□□ -2.09
SSM4P40318 ATP6Q0085 780 nt2.01□□□□□ -2.09
SSM4P40318 YPL261CYPL261C 309 nt2.01□□□□□ -2.09
SSM4P40318 YCL046WYCL046W 324 nt2.01□□□□□ -2.09
SSM4P40318 PXA2YKL188C 2562 nt2.01□□□□□ -2.09
SSM4P40318 CHS1YNL192W 3396 nt2.01□□□□□ -2.09
SSM4P40318 CTR9YOL145C 3234 nt2.01□□□□□ -2.09
SSM4P40318 MSH5YDL154W 2706 nt2.01□□□□□ -2.09
SSM4P40318 MYO2YOR326W 4725 nt2□□□□□ -2.09
SSM4P40318 TMA7YLR262C-A 195 nt2□□□□□ -2.09
SSM4P40318 HCH1YNL281W 462 nt2□□□□□ -2.09
SSM4P40318 YOR029WYOR029W 336 nt2□□□□□ -2.09
SSM4P40318 ZRG17YNR039C 1818 nt2□□□□□ -2.09
SSM4P40318 YJR039WYJR039W 3366 nt2□□□□□ -2.09
SSM4P40318 YOR343W-BYOR343W-B 5313 nt2□□□□□ -2.09
SSM4P40318 YKL083WYKL083W 615 nt1.99□□□□□ -2.09
SSM4P40318 TRM732YMR259C 4263 nt1.99□□□□□ -2.09
SSM4P40318 DNF3YMR162C 4971 nt1.99□□□□□ -2.09
SSM4P40318 YJR003CYJR003C 1560 nt1.99□□□□□ -2.09
SSM4P40318 SWI5YDR146C 2130 nt1.99□□□□□ -2.09
SSM4P40318 RTR1YER139C 681 nt1.98□□□□□ -2.09
SSM4P40318 YHR175W-AYHR175W-A 150 nt1.98□□□□□ -2.09
SSM4P40318 YBR012CYBR012C 420 nt1.98□□□□□ -2.09
SSM4P40318 ADR1YDR216W 3972 nt1.98□□□□□ -2.09
SSM4P40318 RLM1YPL089C 2031 nt1.98□□□□□ -2.09
SSM4P40318 MDS3YGL197W 4464 nt1.97□□□□□ -2.09
SSM4P40318 GIM4YEL003W 336 nt1.97□□□□□ -2.09
SSM4P40318 YGR035CYGR035C 351 nt1.97□□□□□ -2.09
SSM4P40318 YIL059CYIL059C 366 nt1.97□□□□□ -2.09
SSM4P40318 YAL063C-AYAL063C-A 291 nt1.97□□□□□ -2.09
SSM4P40318 YGR174W-AYGR174W-A 87 nt1.96□□□□□ -2.1
SSM4P40318 UBR2YLR024C 5619 nt1.96□□□□□ -2.1
SSM4P40318 NOP53YPL146C 1368 nt1.95□□□□□ -2.1
SSM4P40318 LYS14YDR034C 2373 nt1.95□□□□□ -2.1
SSM4P40318 MAK10YEL053C 2202 nt1.95□□□□□ -2.1
SSM4P40318 GCN2YDR283C 4980 nt1.95□□□□□ -2.1
SSM4P40318 tR(ACG)Q2tR(ACG)Q2 74 nt1.94□□□□□ -2.1
SSM4P40318 TRX1YLR043C 312 nt1.94□□□□□ -2.1
SSM4P40318 IRE1YHR079C 3348 nt1.94□□□□□ -2.1
SSM4P40318 KCS1YDR017C 3153 nt1.94□□□□□ -2.1
SSM4P40318 PAU3YCR104W 375 nt1.93□□□□□ -2.1
SSM4P40318 YDR003W-AYDR003W-A 123 nt1.93□□□□□ -2.1
SSM4P40318 SWI6YLR182W 2412 nt1.93□□□□□ -2.1
SSM4P40318 YOP1YPR028W 543 nt1.92□□□□□ -2.1
SSM4P40318 HSL1YKL101W 4557 nt1.92□□□□□ -2.1
SSM4P40318 EFR3YMR212C 2349 nt1.92□□□□□ -2.1
SSM4P40318 YNL144CYNL144C 2223 nt1.92□□□□□ -2.1
SSM4P40318 NUT2YPR168W 474 nt1.91□□□□□ -2.1
SSM4P40318 RFX1YLR176C 2436 nt1.91□□□□□ -2.1
SSM4P40318 IRC23YOR044W 474 nt1.91□□□□□ -2.1
SSM4P40318 YBR174CYBR174C 315 nt1.91□□□□□ -2.1
SSM4P40318 YLR035C-AYLR035C-A 3468 nt1.9□□□□□ -2.1
SSM4P40318 SXM1YDR395W 2835 nt1.9□□□□□ -2.1
SSM4P40318 SKI3YPR189W 4299 nt1.9□□□□□ -2.11
SSM4P40318 TTI1YKL033W 3117 nt1.89□□□□□ -2.11
SSM4P40318 HMI1YOL095C 2121 nt1.89□□□□□ -2.11
SSM4P40318 CYC7YEL039C 342 nt1.89□□□□□ -2.11
SSM4P40318 FIG2YCR089W 4830 nt1.88□□□□□ -2.11
SSM4P40318 YAR053WYAR053W 297 nt1.88□□□□□ -2.11
SSM4P40318 YOR072W-AYOR072W-A 249 nt1.88□□□□□ -2.11
SSM4P40318 YCS4YLR272C 3531 nt1.88□□□□□ -2.11
SSM4P40318 PKH3YDR466W 2697 nt1.88□□□□□ -2.11
SSM4P40318 ZIP1YDR285W 2628 nt1.87□□□□□ -2.11
SSM4P40318 ENV11YGR071C 2583 nt1.87□□□□□ -2.11
SSM4P40318 PAC1YOR269W 1485 nt1.87□□□□□ -2.11
SSM4P40318 tH(GUG)E1tH(GUG)E1 72 nt1.87□□□□□ -2.11
SSM4P40318 tH(GUG)E2tH(GUG)E2 72 nt1.87□□□□□ -2.11
SSM4P40318 tH(GUG)G1tH(GUG)G1 72 nt1.87□□□□□ -2.11
SSM4P40318 tH(GUG)G2tH(GUG)G2 72 nt1.87□□□□□ -2.11
SSM4P40318 tH(GUG)HtH(GUG)H 72 nt1.87□□□□□ -2.11
SSM4P40318 tH(GUG)KtH(GUG)K 72 nt1.87□□□□□ -2.11
SSM4P40318 tH(GUG)MtH(GUG)M 72 nt1.87□□□□□ -2.11
SSM4P40318 YHL041WYHL041W 450 nt1.87□□□□□ -2.11
SSM4P40318 YPR197CYPR197C 564 nt1.87□□□□□ -2.11
SSM4P40318 RKM1YPL208W 1752 nt1.86□□□□□ -2.11
SSM4P40318 YMR247W-AYMR247W-A 144 nt1.86□□□□□ -2.11
SSM4P40318 LHS1YKL073W 2646 nt1.86□□□□□ -2.11
SSM4P40318 MUK1YPL070W 1839 nt1.86□□□□□ -2.11
SSM4P40318 SLY1YDR189W 2001 nt1.85□□□□□ -2.11
SSM4P40318 FRK1YPL141C 2598 nt1.85□□□□□ -2.11
SSM4P40318 MLH3YPL164C 2148 nt1.85□□□□□ -2.11
SSM4P40318 RPL31AYDL075W 342 nt1.85□□□□□ -2.11
SSM4P40318 RPS20YHL015W 366 nt1.85□□□□□ -2.11
SSM4P40318 UPS1YLR193C 528 nt1.85□□□□□ -2.11
SSM4P40318 YMR141W-AYMR141W-A 225 nt1.85□□□□□ -2.11
SSM4P40318 BIL1YOR304C-A 231 nt1.85□□□□□ -2.11
SSM4P40318 YLL032CYLL032C 2478 nt1.84□□□□□ -2.11
SSM4P40318 YGR130CYGR130C 2451 nt1.84□□□□□ -2.12
SSM4P40318 SGO1YOR073W 1773 nt1.84□□□□□ -2.12
SSM4P40318 RPL38YLR325C 237 nt1.84□□□□□ -2.12
SSM4P40318 YPR016W-AYPR016W-A 261 nt1.84□□□□□ -2.12
SSM4P40318 YAR009CYAR009C 3591 nt1.84□□□□□ -2.12
SSM4P40318 DGR2YKL121W 2559 nt1.83□□□□□ -2.12
SSM4P40318 MRPL31YKL138C 396 nt1.83□□□□□ -2.12
SSM4P40318 YNL058CYNL058C 951 nt1.83□□□□□ -2.12
SSM4P40318 CDC25YLR310C 4770 nt1.82□□□□□ -2.12
SSM4P40318 YPR117WYPR117W 7470 nt1.82□□□□□ -2.12
SSM4P40318 YMR045CYMR045C 5268 nt1.82□□□□□ -2.12
SSM4P40318 IML1YJR138W 4755 nt1.81□□□□□ -2.12
SSM4P40318 MVP1YMR004W 1536 nt1.81□□□□□ -2.12
Retrieved 100 of 7,029 protein–RNA pairs in 31.6 ms