Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
ABCA4P78363 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
ABCA4P78363 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
ABCA4P78363 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.86■□□□□ 0.45
ABCA4P78363 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.86■□□□□ 0.45
ABCA4P78363 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
ABCA4P78363 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
ABCA4P78363 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
ABCA4P78363 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.86■□□□□ 0.45
ABCA4P78363 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.86■□□□□ 0.45
ABCA4P78363 POM121L13P-201ENST00000422362 380 ntBASIC17.86■□□□□ 0.45
ABCA4P78363 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.86■□□□□ 0.45
ABCA4P78363 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
ABCA4P78363 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
ABCA4P78363 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ABCA4P78363 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.85■□□□□ 0.45
ABCA4P78363 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ABCA4P78363 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
ABCA4P78363 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.85■□□□□ 0.45
ABCA4P78363 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
ABCA4P78363 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
ABCA4P78363 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
ABCA4P78363 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
ABCA4P78363 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
ABCA4P78363 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
ABCA4P78363 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.85■□□□□ 0.45
ABCA4P78363 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
ABCA4P78363 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
ABCA4P78363 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ABCA4P78363 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
ABCA4P78363 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
ABCA4P78363 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
ABCA4P78363 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.84■□□□□ 0.45
ABCA4P78363 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.84■□□□□ 0.45
ABCA4P78363 REXO1L12P-201ENST00000622156 912 ntBASIC17.84■□□□□ 0.45
ABCA4P78363 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
ABCA4P78363 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
ABCA4P78363 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC17.84■□□□□ 0.45
ABCA4P78363 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.84■□□□□ 0.45
ABCA4P78363 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.84■□□□□ 0.45
ABCA4P78363 CDV3P1-201ENST00000471403 739 ntBASIC17.84■□□□□ 0.45
ABCA4P78363 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 AC233263.1-201ENST00000578059 224 ntBASIC17.84■□□□□ 0.45
ABCA4P78363 AC010331.1-201ENST00000611423 582 ntBASIC17.84■□□□□ 0.45
ABCA4P78363 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.84■□□□□ 0.45
ABCA4P78363 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC17.84■□□□□ 0.45
ABCA4P78363 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.84■□□□□ 0.45
ABCA4P78363 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
ABCA4P78363 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.84■□□□□ 0.45
ABCA4P78363 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC17.83■□□□□ 0.45
ABCA4P78363 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.83■□□□□ 0.45
ABCA4P78363 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
ABCA4P78363 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
ABCA4P78363 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.83■□□□□ 0.45
ABCA4P78363 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
ABCA4P78363 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
ABCA4P78363 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
ABCA4P78363 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ABCA4P78363 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ABCA4P78363 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC17.83■□□□□ 0.44
ABCA4P78363 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
ABCA4P78363 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ABCA4P78363 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
ABCA4P78363 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
ABCA4P78363 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
ABCA4P78363 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.83■□□□□ 0.44
ABCA4P78363 RPPH1-201ENST00000516869 333 ntBASIC17.83■□□□□ 0.44
ABCA4P78363 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
ABCA4P78363 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.83■□□□□ 0.44
ABCA4P78363 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC17.83■□□□□ 0.44
ABCA4P78363 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.83■□□□□ 0.44
ABCA4P78363 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
ABCA4P78363 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
ABCA4P78363 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
ABCA4P78363 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.82■□□□□ 0.44
ABCA4P78363 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ABCA4P78363 KRT18P68-201ENST00000392293 1000 ntBASIC17.82■□□□□ 0.44
ABCA4P78363 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ABCA4P78363 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.82■□□□□ 0.44
ABCA4P78363 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.82■□□□□ 0.44
ABCA4P78363 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms