Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 KRT18P68-201ENST00000392293 1000 ntBASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL17A1Q9UMD9 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC31.9■■■□□ 2.7
COL17A1Q9UMD9 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
COL17A1Q9UMD9 LINC01124-201ENST00000409786 2117 ntBASIC31.9■■■□□ 2.7
COL17A1Q9UMD9 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC31.9■■■□□ 2.7
COL17A1Q9UMD9 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
COL17A1Q9UMD9 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC31.89■■■□□ 2.7
COL17A1Q9UMD9 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC31.89■■■□□ 2.7
COL17A1Q9UMD9 VMO1-204ENST00000441199 741 ntTSL 2 BASIC31.89■■■□□ 2.7
COL17A1Q9UMD9 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC31.89■■■□□ 2.7
COL17A1Q9UMD9 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC31.89■■■□□ 2.7
COL17A1Q9UMD9 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC31.89■■■□□ 2.7
COL17A1Q9UMD9 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC31.89■■■□□ 2.7
COL17A1Q9UMD9 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.69
COL17A1Q9UMD9 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC31.89■■■□□ 2.69
COL17A1Q9UMD9 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
COL17A1Q9UMD9 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC31.88■■■□□ 2.69
COL17A1Q9UMD9 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
COL17A1Q9UMD9 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC31.88■■■□□ 2.69
COL17A1Q9UMD9 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
COL17A1Q9UMD9 AC113347.1-201ENST00000413321 391 ntBASIC31.88■■■□□ 2.69
COL17A1Q9UMD9 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
COL17A1Q9UMD9 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC31.88■■■□□ 2.69
COL17A1Q9UMD9 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
COL17A1Q9UMD9 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC31.87■■■□□ 2.69
COL17A1Q9UMD9 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
COL17A1Q9UMD9 AC073508.3-201ENST00000619697 1419 ntBASIC31.87■■■□□ 2.69
COL17A1Q9UMD9 THRA-202ENST00000394121 2260 ntTSL 2 BASIC31.87■■■□□ 2.69
COL17A1Q9UMD9 RARG-204ENST00000543726 1779 ntTSL 2 BASIC31.87■■■□□ 2.69
COL17A1Q9UMD9 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
COL17A1Q9UMD9 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
COL17A1Q9UMD9 HES2-205ENST00000487437 968 ntTSL 3 BASIC31.87■■■□□ 2.69
COL17A1Q9UMD9 AC005363.2-201ENST00000618631 242 ntBASIC31.87■■■□□ 2.69
COL17A1Q9UMD9 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC31.87■■■□□ 2.69
COL17A1Q9UMD9 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC31.86■■■□□ 2.69
COL17A1Q9UMD9 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC31.86■■■□□ 2.69
COL17A1Q9UMD9 NTF6B-201ENST00000591913 560 ntBASIC31.86■■■□□ 2.69
COL17A1Q9UMD9 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC31.86■■■□□ 2.69
COL17A1Q9UMD9 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
COL17A1Q9UMD9 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC31.85■■■□□ 2.69
COL17A1Q9UMD9 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
COL17A1Q9UMD9 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC31.85■■■□□ 2.69
COL17A1Q9UMD9 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC31.85■■■□□ 2.69
COL17A1Q9UMD9 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC31.84■■■□□ 2.69
COL17A1Q9UMD9 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC31.84■■■□□ 2.69
COL17A1Q9UMD9 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC31.84■■■□□ 2.69
COL17A1Q9UMD9 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
COL17A1Q9UMD9 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC31.84■■■□□ 2.69
COL17A1Q9UMD9 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC31.84■■■□□ 2.69
COL17A1Q9UMD9 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
COL17A1Q9UMD9 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
COL17A1Q9UMD9 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC31.84■■■□□ 2.69
COL17A1Q9UMD9 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC31.84■■■□□ 2.69
COL17A1Q9UMD9 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC31.84■■■□□ 2.69
COL17A1Q9UMD9 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
COL17A1Q9UMD9 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC31.83■■■□□ 2.69
COL17A1Q9UMD9 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
COL17A1Q9UMD9 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
COL17A1Q9UMD9 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
COL17A1Q9UMD9 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC31.82■■■□□ 2.68
COL17A1Q9UMD9 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
COL17A1Q9UMD9 TERF1P1-201ENST00000311003 1181 ntBASIC31.82■■■□□ 2.68
COL17A1Q9UMD9 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
COL17A1Q9UMD9 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC31.82■■■□□ 2.68
COL17A1Q9UMD9 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC31.82■■■□□ 2.68
COL17A1Q9UMD9 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC31.82■■■□□ 2.68
COL17A1Q9UMD9 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC31.82■■■□□ 2.68
COL17A1Q9UMD9 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC31.82■■■□□ 2.68
COL17A1Q9UMD9 AC087633.2-202ENST00000565166 1439 ntBASIC31.82■■■□□ 2.68
COL17A1Q9UMD9 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC31.82■■■□□ 2.68
COL17A1Q9UMD9 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL17A1Q9UMD9 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
COL17A1Q9UMD9 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
COL17A1Q9UMD9 DUT-205ENST00000558813 769 ntTSL 2 BASIC31.81■■■□□ 2.68
COL17A1Q9UMD9 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC31.8■■■□□ 2.68
COL17A1Q9UMD9 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
COL17A1Q9UMD9 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
COL17A1Q9UMD9 SAPCD2P4-201ENST00000424595 1171 ntBASIC31.8■■■□□ 2.68
COL17A1Q9UMD9 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC31.8■■■□□ 2.68
COL17A1Q9UMD9 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC31.8■■■□□ 2.68
COL17A1Q9UMD9 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC31.8■■■□□ 2.68
COL17A1Q9UMD9 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
COL17A1Q9UMD9 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
COL17A1Q9UMD9 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC31.8■■■□□ 2.68
COL17A1Q9UMD9 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
COL17A1Q9UMD9 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
COL17A1Q9UMD9 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC31.79■■■□□ 2.68
COL17A1Q9UMD9 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
COL17A1Q9UMD9 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC31.79■■■□□ 2.68
COL17A1Q9UMD9 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC31.79■■■□□ 2.68
COL17A1Q9UMD9 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
COL17A1Q9UMD9 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
COL17A1Q9UMD9 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL17A1Q9UMD9 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms