Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC27.98■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC27.98■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC27.98■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC27.97■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC27.97■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC27.97■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC27.97■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC27.97■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC27.97■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC27.97■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC27.96■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC27.96■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 AC061975.6-201ENST00000579045 1553 ntBASIC27.96■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 NCF1B-203ENST00000435988 1254 ntBASIC27.96■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC27.96■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC27.96■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC27.96■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC27.96■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 RARG-204ENST00000543726 1779 ntTSL 2 BASIC27.96■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC27.96■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC27.96■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC27.95■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC27.95■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC27.95■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC27.95■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC27.95■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 CROCCP5-201ENST00000436658 830 ntBASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 NARF-205ENST00000412079 1760 ntTSL 5 BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC27.94■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC27.93■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 AC016769.1-201ENST00000409132 1010 ntBASIC27.93■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC27.93■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC27.93■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC27.93■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 KRT18P14-201ENST00000534205 1250 ntBASIC27.93■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC27.93■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 WT1-AS_3.1-201ENST00000613262 234 ntBASIC27.93■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC27.93■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 AC006015.1-201ENST00000429970 570 ntBASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC27.92■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC27.91■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC27.91■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 PCDHAC2-203ENST00000615316 3011 ntBASIC27.91■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC27.91■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC27.91■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC27.91■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC27.91■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC27.91■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC27.91■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC27.91■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC27.91■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms