Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 PENK-204ENST00000518770 863 ntTSL 2 BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 BRWD1-AS2-201ENST00000603064 1028 ntBASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC32.18■■■□□ 2.74
COL17A1Q9UMD9 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
COL17A1Q9UMD9 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
COL17A1Q9UMD9 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
COL17A1Q9UMD9 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC32.17■■■□□ 2.74
COL17A1Q9UMD9 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC32.17■■■□□ 2.74
COL17A1Q9UMD9 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC32.17■■■□□ 2.74
COL17A1Q9UMD9 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC32.17■■■□□ 2.74
COL17A1Q9UMD9 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
COL17A1Q9UMD9 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
COL17A1Q9UMD9 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC32.16■■■□□ 2.74
COL17A1Q9UMD9 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
COL17A1Q9UMD9 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC32.16■■■□□ 2.74
COL17A1Q9UMD9 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
COL17A1Q9UMD9 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
COL17A1Q9UMD9 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC32.16■■■□□ 2.74
COL17A1Q9UMD9 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
COL17A1Q9UMD9 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
COL17A1Q9UMD9 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
COL17A1Q9UMD9 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
COL17A1Q9UMD9 FAM21FP-204ENST00000608637 956 ntBASIC32.16■■■□□ 2.74
COL17A1Q9UMD9 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC32.16■■■□□ 2.74
COL17A1Q9UMD9 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
COL17A1Q9UMD9 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC32.15■■■□□ 2.74
COL17A1Q9UMD9 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
COL17A1Q9UMD9 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
COL17A1Q9UMD9 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC32.15■■■□□ 2.74
COL17A1Q9UMD9 P4HB-223ENST00000576390 439 ntTSL 4 BASIC32.15■■■□□ 2.74
COL17A1Q9UMD9 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC32.15■■■□□ 2.74
COL17A1Q9UMD9 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
COL17A1Q9UMD9 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC32.14■■■□□ 2.74
COL17A1Q9UMD9 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC32.14■■■□□ 2.74
COL17A1Q9UMD9 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
COL17A1Q9UMD9 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
COL17A1Q9UMD9 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC32.14■■■□□ 2.74
COL17A1Q9UMD9 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
COL17A1Q9UMD9 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC32.14■■■□□ 2.74
COL17A1Q9UMD9 REXO2-208ENST00000539754 791 ntTSL 2 BASIC32.14■■■□□ 2.74
COL17A1Q9UMD9 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC32.14■■■□□ 2.74
COL17A1Q9UMD9 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
COL17A1Q9UMD9 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
COL17A1Q9UMD9 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
COL17A1Q9UMD9 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
COL17A1Q9UMD9 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
COL17A1Q9UMD9 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC32.12■■■□□ 2.73
COL17A1Q9UMD9 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
COL17A1Q9UMD9 MFF-205ENST00000354503 1085 ntTSL 2 BASIC32.11■■■□□ 2.73
COL17A1Q9UMD9 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC32.11■■■□□ 2.73
COL17A1Q9UMD9 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC32.11■■■□□ 2.73
COL17A1Q9UMD9 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC32.11■■■□□ 2.73
COL17A1Q9UMD9 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC32.11■■■□□ 2.73
COL17A1Q9UMD9 AP001412.1-201ENST00000608405 714 ntBASIC32.11■■■□□ 2.73
COL17A1Q9UMD9 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
COL17A1Q9UMD9 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC32.11■■■□□ 2.73
COL17A1Q9UMD9 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC32.1■■■□□ 2.73
COL17A1Q9UMD9 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC32.1■■■□□ 2.73
COL17A1Q9UMD9 PRKY-204ENST00000533551 1019 ntBASIC32.1■■■□□ 2.73
COL17A1Q9UMD9 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC32.1■■■□□ 2.73
COL17A1Q9UMD9 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC32.1■■■□□ 2.73
COL17A1Q9UMD9 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
COL17A1Q9UMD9 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC32.1■■■□□ 2.73
COL17A1Q9UMD9 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC32.1■■■□□ 2.73
COL17A1Q9UMD9 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
COL17A1Q9UMD9 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC32.1■■■□□ 2.73
COL17A1Q9UMD9 NME3-204ENST00000563498 920 ntTSL 2 BASIC32.1■■■□□ 2.73
COL17A1Q9UMD9 AL589743.5-201ENST00000616611 1050 ntBASIC32.1■■■□□ 2.73
COL17A1Q9UMD9 AL023875.1-201ENST00000640777 796 ntBASIC32.1■■■□□ 2.73
COL17A1Q9UMD9 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
COL17A1Q9UMD9 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
COL17A1Q9UMD9 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms