Protein–RNA interactions for Protein: Q99PP7

Trim33, E3 ubiquitin-protein ligase TRIM33, mousemouse

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim33Q99PP7 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Trim33Q99PP7 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Trim33Q99PP7 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.48
Trim33Q99PP7 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Trim33Q99PP7 Gm9397-201ENSMUST00000200125 605 ntBASIC24.32■■□□□ 1.48
Trim33Q99PP7 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Trim33Q99PP7 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Trim33Q99PP7 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Trim33Q99PP7 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC24.31■■□□□ 1.48
Trim33Q99PP7 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Trim33Q99PP7 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC24.31■■□□□ 1.48
Trim33Q99PP7 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
Trim33Q99PP7 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
Trim33Q99PP7 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Trim33Q99PP7 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trim33Q99PP7 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC24.28■■□□□ 1.48
Trim33Q99PP7 Gm45855-201ENSMUST00000212546 880 ntBASIC24.27■■□□□ 1.48
Trim33Q99PP7 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Trim33Q99PP7 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Trim33Q99PP7 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Trim33Q99PP7 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Trim33Q99PP7 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Trim33Q99PP7 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Trim33Q99PP7 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC24.24■■□□□ 1.47
Trim33Q99PP7 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trim33Q99PP7 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC24.24■■□□□ 1.47
Trim33Q99PP7 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Trim33Q99PP7 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Trim33Q99PP7 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trim33Q99PP7 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trim33Q99PP7 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trim33Q99PP7 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
Trim33Q99PP7 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Trim33Q99PP7 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Trim33Q99PP7 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Trim33Q99PP7 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Trim33Q99PP7 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC24.19■■□□□ 1.46
Trim33Q99PP7 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Trim33Q99PP7 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
Trim33Q99PP7 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim33Q99PP7 Gm24970-201ENSMUST00000175582 82 ntBASIC24.15■■□□□ 1.46
Trim33Q99PP7 Gm43863-201ENSMUST00000203822 1192 ntBASIC24.15■■□□□ 1.46
Trim33Q99PP7 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim33Q99PP7 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim33Q99PP7 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.46
Trim33Q99PP7 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC24.14■■□□□ 1.45
Trim33Q99PP7 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Trim33Q99PP7 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trim33Q99PP7 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trim33Q99PP7 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trim33Q99PP7 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trim33Q99PP7 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
Trim33Q99PP7 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
Trim33Q99PP7 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
Trim33Q99PP7 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Trim33Q99PP7 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
Trim33Q99PP7 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
Trim33Q99PP7 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC24.08■■□□□ 1.45
Trim33Q99PP7 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC24.08■■□□□ 1.45
Trim33Q99PP7 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.45
Trim33Q99PP7 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Trim33Q99PP7 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Trim33Q99PP7 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC24.07■■□□□ 1.44
Trim33Q99PP7 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Trim33Q99PP7 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Trim33Q99PP7 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC24.06■■□□□ 1.44
Trim33Q99PP7 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim33Q99PP7 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC24.05■■□□□ 1.44
Trim33Q99PP7 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC24.05■■□□□ 1.44
Trim33Q99PP7 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC24.05■■□□□ 1.44
Trim33Q99PP7 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Trim33Q99PP7 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
Trim33Q99PP7 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Trim33Q99PP7 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
Trim33Q99PP7 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trim33Q99PP7 AC157572.2-201ENSMUST00000226970 908 ntBASIC24.03■■□□□ 1.44
Trim33Q99PP7 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Trim33Q99PP7 Gm43445-201ENSMUST00000198564 2091 ntBASIC24.02■■□□□ 1.44
Trim33Q99PP7 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC24.02■■□□□ 1.44
Trim33Q99PP7 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
Trim33Q99PP7 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Trim33Q99PP7 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Trim33Q99PP7 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Trim33Q99PP7 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Trim33Q99PP7 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Trim33Q99PP7 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Trim33Q99PP7 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC23.98■■□□□ 1.43
Trim33Q99PP7 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
Trim33Q99PP7 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trim33Q99PP7 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
Trim33Q99PP7 Gm6206-201ENSMUST00000133472 2199 ntBASIC23.97■■□□□ 1.43
Trim33Q99PP7 Gm9905-201ENSMUST00000065740 1845 ntBASIC23.97■■□□□ 1.43
Trim33Q99PP7 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC23.96■■□□□ 1.43
Trim33Q99PP7 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC23.95■■□□□ 1.42
Trim33Q99PP7 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Trim33Q99PP7 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC23.94■■□□□ 1.42
Trim33Q99PP7 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC23.94■■□□□ 1.42
Trim33Q99PP7 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trim33Q99PP7 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Trim33Q99PP7 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC23.93■■□□□ 1.42
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms