Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC32.88■■■□□ 2.85
Ddb1Q3U1J4 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC32.88■■■□□ 2.85
Ddb1Q3U1J4 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
Ddb1Q3U1J4 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC32.87■■■□□ 2.85
Ddb1Q3U1J4 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
Ddb1Q3U1J4 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
Ddb1Q3U1J4 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
Ddb1Q3U1J4 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
Ddb1Q3U1J4 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
Ddb1Q3U1J4 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
Ddb1Q3U1J4 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC32.83■■■□□ 2.85
Ddb1Q3U1J4 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC32.82■■■□□ 2.84
Ddb1Q3U1J4 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC32.82■■■□□ 2.84
Ddb1Q3U1J4 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC32.82■■■□□ 2.84
Ddb1Q3U1J4 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Ddb1Q3U1J4 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC32.81■■■□□ 2.84
Ddb1Q3U1J4 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
Ddb1Q3U1J4 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
Ddb1Q3U1J4 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC32.81■■■□□ 2.84
Ddb1Q3U1J4 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC32.81■■■□□ 2.84
Ddb1Q3U1J4 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
Ddb1Q3U1J4 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC32.79■■■□□ 2.84
Ddb1Q3U1J4 Gm11599-201ENSMUST00000118720 878 ntBASIC32.78■■■□□ 2.84
Ddb1Q3U1J4 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
Ddb1Q3U1J4 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC32.78■■■□□ 2.84
Ddb1Q3U1J4 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
Ddb1Q3U1J4 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
Ddb1Q3U1J4 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
Ddb1Q3U1J4 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC32.71■■■□□ 2.83
Ddb1Q3U1J4 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
Ddb1Q3U1J4 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC32.7■■■□□ 2.83
Ddb1Q3U1J4 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC32.7■■■□□ 2.83
Ddb1Q3U1J4 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC32.7■■■□□ 2.83
Ddb1Q3U1J4 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC32.68■■■□□ 2.82
Ddb1Q3U1J4 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC32.67■■■□□ 2.82
Ddb1Q3U1J4 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC32.67■■■□□ 2.82
Ddb1Q3U1J4 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC32.66■■■□□ 2.82
Ddb1Q3U1J4 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
Ddb1Q3U1J4 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
Ddb1Q3U1J4 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
Ddb1Q3U1J4 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Ddb1Q3U1J4 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Ddb1Q3U1J4 Mir6538-201ENSMUST00000183713 110 ntBASIC32.62■■■□□ 2.81
Ddb1Q3U1J4 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Ddb1Q3U1J4 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC32.6■■■□□ 2.81
Ddb1Q3U1J4 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Ddb1Q3U1J4 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
Ddb1Q3U1J4 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
Ddb1Q3U1J4 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
Ddb1Q3U1J4 Gm11175-201ENSMUST00000116172 543 ntBASIC32.57■■■□□ 2.8
Ddb1Q3U1J4 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC32.57■■■□□ 2.8
Ddb1Q3U1J4 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC32.57■■■□□ 2.8
Ddb1Q3U1J4 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
Ddb1Q3U1J4 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
Ddb1Q3U1J4 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC32.54■■■□□ 2.8
Ddb1Q3U1J4 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
Ddb1Q3U1J4 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
Ddb1Q3U1J4 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Ddb1Q3U1J4 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
Ddb1Q3U1J4 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
Ddb1Q3U1J4 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
Ddb1Q3U1J4 Gm30346-201ENSMUST00000218641 1699 ntBASIC32.46■■■□□ 2.79
Ddb1Q3U1J4 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
Ddb1Q3U1J4 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC32.45■■■□□ 2.79
Ddb1Q3U1J4 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC32.44■■■□□ 2.78
Ddb1Q3U1J4 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC32.44■■■□□ 2.78
Ddb1Q3U1J4 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC32.44■■■□□ 2.78
Ddb1Q3U1J4 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC32.43■■■□□ 2.78
Ddb1Q3U1J4 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
Ddb1Q3U1J4 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC32.42■■■□□ 2.78
Ddb1Q3U1J4 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC32.42■■■□□ 2.78
Ddb1Q3U1J4 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC32.41■■■□□ 2.78
Ddb1Q3U1J4 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC32.41■■■□□ 2.78
Ddb1Q3U1J4 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
Ddb1Q3U1J4 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC32.4■■■□□ 2.78
Ddb1Q3U1J4 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC32.4■■■□□ 2.78
Ddb1Q3U1J4 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
Ddb1Q3U1J4 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC32.39■■■□□ 2.78
Ddb1Q3U1J4 Cap2-205ENSMUST00000225824 1634 ntBASIC32.38■■■□□ 2.77
Ddb1Q3U1J4 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC32.38■■■□□ 2.77
Ddb1Q3U1J4 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC32.38■■■□□ 2.77
Ddb1Q3U1J4 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
Ddb1Q3U1J4 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
Ddb1Q3U1J4 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC32.34■■■□□ 2.77
Ddb1Q3U1J4 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC32.34■■■□□ 2.77
Ddb1Q3U1J4 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
Ddb1Q3U1J4 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC32.33■■■□□ 2.77
Ddb1Q3U1J4 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
Ddb1Q3U1J4 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
Ddb1Q3U1J4 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC32.32■■■□□ 2.76
Ddb1Q3U1J4 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC32.3■■■□□ 2.76
Ddb1Q3U1J4 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC32.29■■■□□ 2.76
Ddb1Q3U1J4 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC32.29■■■□□ 2.76
Ddb1Q3U1J4 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC32.29■■■□□ 2.76
Ddb1Q3U1J4 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
Ddb1Q3U1J4 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Ddb1Q3U1J4 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC32.27■■■□□ 2.76
Ddb1Q3U1J4 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC32.26■■■□□ 2.75
Ddb1Q3U1J4 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC32.25■■■□□ 2.75
Ddb1Q3U1J4 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms