Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ABCA4P78363 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.65■□□□□ 0.58
ABCA4P78363 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ABCA4P78363 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ABCA4P78363 AC083906.2-201ENST00000511578 360 ntBASIC18.65■□□□□ 0.58
ABCA4P78363 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.65■□□□□ 0.58
ABCA4P78363 KRT18P6-201ENST00000555540 1265 ntBASIC18.65■□□□□ 0.58
ABCA4P78363 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.65■□□□□ 0.58
ABCA4P78363 UBE2DNL-204ENST00000602536 740 ntBASIC18.65■□□□□ 0.58
ABCA4P78363 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ABCA4P78363 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.65■□□□□ 0.58
ABCA4P78363 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
ABCA4P78363 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ABCA4P78363 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
ABCA4P78363 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ABCA4P78363 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ABCA4P78363 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
ABCA4P78363 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
ABCA4P78363 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.64■□□□□ 0.57
ABCA4P78363 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
ABCA4P78363 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ABCA4P78363 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
ABCA4P78363 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ABCA4P78363 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.64■□□□□ 0.57
ABCA4P78363 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.64■□□□□ 0.57
ABCA4P78363 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ABCA4P78363 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
ABCA4P78363 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ABCA4P78363 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
ABCA4P78363 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ABCA4P78363 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.63■□□□□ 0.57
ABCA4P78363 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ABCA4P78363 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
ABCA4P78363 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ABCA4P78363 AC079140.4-201ENST00000507448 529 ntBASIC18.63■□□□□ 0.57
ABCA4P78363 MYCNOS-205ENST00000641950 531 ntBASIC18.63■□□□□ 0.57
ABCA4P78363 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ABCA4P78363 SLC7A5P2-201ENST00000553010 536 ntBASIC18.63■□□□□ 0.57
ABCA4P78363 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.63■□□□□ 0.57
ABCA4P78363 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.63■□□□□ 0.57
ABCA4P78363 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.63■□□□□ 0.57
ABCA4P78363 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC18.63■□□□□ 0.57
ABCA4P78363 DUSP8P3-201ENST00000399571 1760 ntBASIC18.63■□□□□ 0.57
ABCA4P78363 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ABCA4P78363 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ABCA4P78363 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ABCA4P78363 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA4P78363 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA4P78363 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.62■□□□□ 0.57
ABCA4P78363 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA4P78363 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA4P78363 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA4P78363 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.62■□□□□ 0.57
ABCA4P78363 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA4P78363 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA4P78363 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA4P78363 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
ABCA4P78363 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA4P78363 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA4P78363 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.62■□□□□ 0.57
ABCA4P78363 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.62■□□□□ 0.57
ABCA4P78363 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ABCA4P78363 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
ABCA4P78363 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ABCA4P78363 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
ABCA4P78363 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC18.61■□□□□ 0.57
ABCA4P78363 SLC29A4P1-201ENST00000398760 971 ntBASIC18.61■□□□□ 0.57
ABCA4P78363 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ABCA4P78363 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.61■□□□□ 0.57
ABCA4P78363 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
ABCA4P78363 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
ABCA4P78363 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ABCA4P78363 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC18.61■□□□□ 0.57
ABCA4P78363 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC18.61■□□□□ 0.57
ABCA4P78363 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
ABCA4P78363 AC069152.1-201ENST00000438030 544 ntBASIC18.61■□□□□ 0.57
ABCA4P78363 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.61■□□□□ 0.57
ABCA4P78363 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.61■□□□□ 0.57
ABCA4P78363 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
ABCA4P78363 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC18.61■□□□□ 0.57
ABCA4P78363 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ABCA4P78363 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ABCA4P78363 THRA-202ENST00000394121 2260 ntTSL 2 BASIC18.6■□□□□ 0.57
ABCA4P78363 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ABCA4P78363 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ABCA4P78363 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
ABCA4P78363 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ABCA4P78363 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
ABCA4P78363 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ABCA4P78363 OXCT2P1-201ENST00000447263 1535 ntBASIC18.6■□□□□ 0.57
ABCA4P78363 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
ABCA4P78363 AC007322.1-201ENST00000426983 750 ntBASIC18.6■□□□□ 0.57
ABCA4P78363 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.6■□□□□ 0.57
ABCA4P78363 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.6■□□□□ 0.57
ABCA4P78363 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.6■□□□□ 0.57
ABCA4P78363 AL138781.1-201ENST00000566567 1274 ntBASIC18.6■□□□□ 0.57
ABCA4P78363 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA4P78363 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC18.59■□□□□ 0.57
ABCA4P78363 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ABCA4P78363 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms