Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LSM1O15116 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
LSM1O15116 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LSM1O15116 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LSM1O15116 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LSM1O15116 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.94
LSM1O15116 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.89■□□□□ 0.94
LSM1O15116 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LSM1O15116 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
LSM1O15116 KRT16P3-201ENST00000439127 1283 ntBASIC20.89■□□□□ 0.93
LSM1O15116 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.89■□□□□ 0.93
LSM1O15116 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
LSM1O15116 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
LSM1O15116 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.88■□□□□ 0.93
LSM1O15116 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LSM1O15116 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LSM1O15116 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LSM1O15116 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
LSM1O15116 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.88■□□□□ 0.93
LSM1O15116 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
LSM1O15116 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
LSM1O15116 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LSM1O15116 AC026310.3-201ENST00000625186 2373 ntBASIC20.88■□□□□ 0.93
LSM1O15116 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.88■□□□□ 0.93
LSM1O15116 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LSM1O15116 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LSM1O15116 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
LSM1O15116 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LSM1O15116 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LSM1O15116 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LSM1O15116 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
LSM1O15116 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.87■□□□□ 0.93
LSM1O15116 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
LSM1O15116 AC006455.2-201ENST00000429931 906 ntBASIC20.87■□□□□ 0.93
LSM1O15116 AL031602.1-201ENST00000633169 911 ntBASIC20.87■□□□□ 0.93
LSM1O15116 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
LSM1O15116 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LSM1O15116 AC133637.1-201ENST00000624115 1537 ntBASIC20.87■□□□□ 0.93
LSM1O15116 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LSM1O15116 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LSM1O15116 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.87■□□□□ 0.93
LSM1O15116 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LSM1O15116 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LSM1O15116 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LSM1O15116 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
LSM1O15116 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.86■□□□□ 0.93
LSM1O15116 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LSM1O15116 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LSM1O15116 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.86■□□□□ 0.93
LSM1O15116 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LSM1O15116 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LSM1O15116 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.86■□□□□ 0.93
LSM1O15116 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LSM1O15116 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LSM1O15116 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.85■□□□□ 0.93
LSM1O15116 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LSM1O15116 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LSM1O15116 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LSM1O15116 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.85■□□□□ 0.93
LSM1O15116 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.85■□□□□ 0.93
LSM1O15116 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LSM1O15116 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LSM1O15116 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LSM1O15116 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LSM1O15116 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
LSM1O15116 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LSM1O15116 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LSM1O15116 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LSM1O15116 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LSM1O15116 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.84■□□□□ 0.93
LSM1O15116 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.84■□□□□ 0.93
LSM1O15116 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LSM1O15116 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.84■□□□□ 0.93
LSM1O15116 pRNA.6-201ENST00000610482 90 ntBASIC20.84■□□□□ 0.93
LSM1O15116 pRNA.5-201ENST00000612139 90 ntBASIC20.84■□□□□ 0.93
LSM1O15116 pRNA.11-201ENST00000618423 90 ntBASIC20.84■□□□□ 0.93
LSM1O15116 pRNA.13-201ENST00000619112 90 ntBASIC20.84■□□□□ 0.93
LSM1O15116 AL035685.1-201ENST00000636663 812 ntBASIC20.84■□□□□ 0.93
LSM1O15116 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
LSM1O15116 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LSM1O15116 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
LSM1O15116 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LSM1O15116 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.84■□□□□ 0.93
LSM1O15116 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LSM1O15116 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LSM1O15116 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LSM1O15116 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LSM1O15116 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.83■□□□□ 0.93
LSM1O15116 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LSM1O15116 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LSM1O15116 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
LSM1O15116 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.83■□□□□ 0.93
LSM1O15116 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
LSM1O15116 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LSM1O15116 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.83■□□□□ 0.93
LSM1O15116 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.83■□□□□ 0.92
LSM1O15116 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.83■□□□□ 0.92
LSM1O15116 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LSM1O15116 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.82■□□□□ 0.92
LSM1O15116 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms