Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC33.74■■■□□ 2.99
COL17A1Q9UMD9 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC33.74■■■□□ 2.99
COL17A1Q9UMD9 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
COL17A1Q9UMD9 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC33.74■■■□□ 2.99
COL17A1Q9UMD9 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC33.74■■■□□ 2.99
COL17A1Q9UMD9 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC33.74■■■□□ 2.99
COL17A1Q9UMD9 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC33.73■■■□□ 2.99
COL17A1Q9UMD9 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC33.73■■■□□ 2.99
COL17A1Q9UMD9 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC33.73■■■□□ 2.99
COL17A1Q9UMD9 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC33.72■■■□□ 2.99
COL17A1Q9UMD9 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
COL17A1Q9UMD9 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
COL17A1Q9UMD9 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC33.72■■■□□ 2.99
COL17A1Q9UMD9 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC33.72■■■□□ 2.99
COL17A1Q9UMD9 PPP1R14BP2-201ENST00000426284 444 ntBASIC33.72■■■□□ 2.99
COL17A1Q9UMD9 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC33.72■■■□□ 2.99
COL17A1Q9UMD9 FP325331.1-202ENST00000623531 1380 ntBASIC33.71■■■□□ 2.99
COL17A1Q9UMD9 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
COL17A1Q9UMD9 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC33.71■■■□□ 2.99
COL17A1Q9UMD9 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC33.71■■■□□ 2.99
COL17A1Q9UMD9 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
COL17A1Q9UMD9 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC33.71■■■□□ 2.99
COL17A1Q9UMD9 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC33.71■■■□□ 2.99
COL17A1Q9UMD9 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
COL17A1Q9UMD9 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
COL17A1Q9UMD9 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC33.7■■■□□ 2.99
COL17A1Q9UMD9 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC33.7■■■□□ 2.99
COL17A1Q9UMD9 MIR1224-201ENST00000408193 85 ntBASIC33.7■■■□□ 2.99
COL17A1Q9UMD9 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC33.7■■■□□ 2.99
COL17A1Q9UMD9 MAX-217ENST00000557277 728 ntTSL 3 BASIC33.7■■■□□ 2.99
COL17A1Q9UMD9 MIR4758-201ENST00000577688 71 ntBASIC33.7■■■□□ 2.99
COL17A1Q9UMD9 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC33.7■■■□□ 2.99
COL17A1Q9UMD9 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC33.7■■■□□ 2.99
COL17A1Q9UMD9 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC33.7■■■□□ 2.99
COL17A1Q9UMD9 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC33.7■■■□□ 2.99
COL17A1Q9UMD9 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 UQCRFS1P1-201ENST00000435169 820 ntBASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 AL158047.1-201ENST00000445918 881 ntBASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC33.69■■■□□ 2.98
COL17A1Q9UMD9 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC33.68■■■□□ 2.98
COL17A1Q9UMD9 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC33.68■■■□□ 2.98
COL17A1Q9UMD9 AC083880.1-201ENST00000608266 535 ntBASIC33.68■■■□□ 2.98
COL17A1Q9UMD9 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC33.68■■■□□ 2.98
COL17A1Q9UMD9 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC33.67■■■□□ 2.98
COL17A1Q9UMD9 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC33.67■■■□□ 2.98
COL17A1Q9UMD9 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC33.67■■■□□ 2.98
COL17A1Q9UMD9 MIPEPP3-201ENST00000412105 444 ntBASIC33.67■■■□□ 2.98
COL17A1Q9UMD9 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC33.67■■■□□ 2.98
COL17A1Q9UMD9 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC33.67■■■□□ 2.98
COL17A1Q9UMD9 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC33.67■■■□□ 2.98
COL17A1Q9UMD9 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC33.67■■■□□ 2.98
COL17A1Q9UMD9 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC33.66■■■□□ 2.98
COL17A1Q9UMD9 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC33.66■■■□□ 2.98
COL17A1Q9UMD9 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC33.66■■■□□ 2.98
COL17A1Q9UMD9 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC33.66■■■□□ 2.98
COL17A1Q9UMD9 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC33.66■■■□□ 2.98
COL17A1Q9UMD9 AC092118.2-201ENST00000613495 667 ntBASIC33.66■■■□□ 2.98
COL17A1Q9UMD9 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC33.66■■■□□ 2.98
COL17A1Q9UMD9 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC33.66■■■□□ 2.98
COL17A1Q9UMD9 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC33.65■■■□□ 2.98
COL17A1Q9UMD9 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC33.65■■■□□ 2.98
COL17A1Q9UMD9 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC33.65■■■□□ 2.98
COL17A1Q9UMD9 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC33.65■■■□□ 2.98
COL17A1Q9UMD9 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC33.64■■■□□ 2.98
COL17A1Q9UMD9 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC33.64■■■□□ 2.98
COL17A1Q9UMD9 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
COL17A1Q9UMD9 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC33.64■■■□□ 2.98
COL17A1Q9UMD9 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC33.64■■■□□ 2.98
COL17A1Q9UMD9 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC33.64■■■□□ 2.98
COL17A1Q9UMD9 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC33.64■■■□□ 2.98
COL17A1Q9UMD9 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
COL17A1Q9UMD9 ESRRAP1-201ENST00000400596 1257 ntBASIC33.63■■■□□ 2.97
COL17A1Q9UMD9 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC33.63■■■□□ 2.97
COL17A1Q9UMD9 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC33.63■■■□□ 2.97
COL17A1Q9UMD9 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC33.63■■■□□ 2.97
COL17A1Q9UMD9 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
COL17A1Q9UMD9 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC33.63■■■□□ 2.97
COL17A1Q9UMD9 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC33.63■■■□□ 2.97
COL17A1Q9UMD9 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC33.63■■■□□ 2.97
COL17A1Q9UMD9 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC33.63■■■□□ 2.97
COL17A1Q9UMD9 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC33.63■■■□□ 2.97
COL17A1Q9UMD9 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC33.63■■■□□ 2.97
COL17A1Q9UMD9 AC142381.4-202ENST00000563973 229 ntBASIC33.63■■■□□ 2.97
COL17A1Q9UMD9 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC33.63■■■□□ 2.97
COL17A1Q9UMD9 KRT87P-202ENST00000534226 1464 ntBASIC33.62■■■□□ 2.97
COL17A1Q9UMD9 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms