Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PKNOX1P55347 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PKNOX1P55347 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PKNOX1P55347 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PKNOX1P55347 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
PKNOX1P55347 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
PKNOX1P55347 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PKNOX1P55347 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
PKNOX1P55347 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PKNOX1P55347 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.73■■□□□ 1.07
PKNOX1P55347 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PKNOX1P55347 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PKNOX1P55347 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.73■■□□□ 1.07
PKNOX1P55347 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
PKNOX1P55347 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PKNOX1P55347 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PKNOX1P55347 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.73■■□□□ 1.07
PKNOX1P55347 ESRRAP2-201ENST00000418437 1549 ntBASIC21.73■■□□□ 1.07
PKNOX1P55347 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PKNOX1P55347 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PKNOX1P55347 AC137767.1-201ENST00000602918 1920 ntBASIC21.72■■□□□ 1.07
PKNOX1P55347 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.72■■□□□ 1.07
PKNOX1P55347 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.72■■□□□ 1.07
PKNOX1P55347 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PKNOX1P55347 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.72■■□□□ 1.07
PKNOX1P55347 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.72■■□□□ 1.07
PKNOX1P55347 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
PKNOX1P55347 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.72■■□□□ 1.07
PKNOX1P55347 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
PKNOX1P55347 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PKNOX1P55347 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PKNOX1P55347 AL353803.4-201ENST00000565882 1934 ntBASIC21.72■■□□□ 1.07
PKNOX1P55347 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
PKNOX1P55347 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
PKNOX1P55347 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
PKNOX1P55347 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PKNOX1P55347 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.71■■□□□ 1.07
PKNOX1P55347 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.71■■□□□ 1.07
PKNOX1P55347 AL031848.2-201ENST00000607670 837 ntBASIC21.71■■□□□ 1.07
PKNOX1P55347 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.71■■□□□ 1.07
PKNOX1P55347 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PKNOX1P55347 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PKNOX1P55347 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PKNOX1P55347 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PKNOX1P55347 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
PKNOX1P55347 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PKNOX1P55347 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.7■■□□□ 1.06
PKNOX1P55347 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.7■■□□□ 1.06
PKNOX1P55347 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.7■■□□□ 1.06
PKNOX1P55347 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PKNOX1P55347 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PKNOX1P55347 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.7■■□□□ 1.06
PKNOX1P55347 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.7■■□□□ 1.06
PKNOX1P55347 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PKNOX1P55347 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.7■■□□□ 1.06
PKNOX1P55347 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
PKNOX1P55347 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PKNOX1P55347 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.69■■□□□ 1.06
PKNOX1P55347 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.69■■□□□ 1.06
PKNOX1P55347 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
PKNOX1P55347 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
PKNOX1P55347 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
PKNOX1P55347 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PKNOX1P55347 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.69■■□□□ 1.06
PKNOX1P55347 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PKNOX1P55347 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PKNOX1P55347 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
PKNOX1P55347 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
PKNOX1P55347 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PKNOX1P55347 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.68■■□□□ 1.06
PKNOX1P55347 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PKNOX1P55347 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PKNOX1P55347 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.68■■□□□ 1.06
PKNOX1P55347 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
PKNOX1P55347 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
PKNOX1P55347 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PKNOX1P55347 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.68■■□□□ 1.06
PKNOX1P55347 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.68■■□□□ 1.06
PKNOX1P55347 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.67■■□□□ 1.06
PKNOX1P55347 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.67■■□□□ 1.06
PKNOX1P55347 AC144652.1-201ENST00000609974 1624 ntBASIC21.67■■□□□ 1.06
PKNOX1P55347 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PKNOX1P55347 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PKNOX1P55347 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
PKNOX1P55347 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
PKNOX1P55347 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
PKNOX1P55347 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.67■■□□□ 1.06
PKNOX1P55347 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
PKNOX1P55347 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.66■■□□□ 1.06
PKNOX1P55347 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.66■■□□□ 1.06
PKNOX1P55347 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.66■■□□□ 1.06
PKNOX1P55347 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
PKNOX1P55347 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PKNOX1P55347 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PKNOX1P55347 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.66■■□□□ 1.06
PKNOX1P55347 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.66■■□□□ 1.06
PKNOX1P55347 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
PKNOX1P55347 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.66■■□□□ 1.06
PKNOX1P55347 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PKNOX1P55347 MIR6722-201ENST00000617286 78 ntBASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms