Protein–RNA interactions for Protein: P48065

SLC6A12, Sodium- and chloride-dependent betaine transporter, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A12P48065 MIR6724-3-201ENST00000622482 92 ntBASIC21.71■■□□□ 1.07
SLC6A12P48065 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC6A12P48065 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SLC6A12P48065 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SLC6A12P48065 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SLC6A12P48065 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.7■■□□□ 1.06
SLC6A12P48065 AC009102.2-201ENST00000606772 1639 ntBASIC21.7■■□□□ 1.06
SLC6A12P48065 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SLC6A12P48065 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.7■■□□□ 1.06
SLC6A12P48065 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.7■■□□□ 1.06
SLC6A12P48065 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.7■■□□□ 1.06
SLC6A12P48065 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.7■■□□□ 1.06
SLC6A12P48065 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
SLC6A12P48065 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
SLC6A12P48065 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A12P48065 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A12P48065 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A12P48065 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A12P48065 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.69■■□□□ 1.06
SLC6A12P48065 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A12P48065 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.69■■□□□ 1.06
SLC6A12P48065 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
SLC6A12P48065 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A12P48065 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A12P48065 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
SLC6A12P48065 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A12P48065 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A12P48065 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A12P48065 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.69■■□□□ 1.06
SLC6A12P48065 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A12P48065 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SLC6A12P48065 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SLC6A12P48065 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
SLC6A12P48065 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SLC6A12P48065 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SLC6A12P48065 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.68■■□□□ 1.06
SLC6A12P48065 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
SLC6A12P48065 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
SLC6A12P48065 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.68■■□□□ 1.06
SLC6A12P48065 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.68■■□□□ 1.06
SLC6A12P48065 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A12P48065 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A12P48065 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A12P48065 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
SLC6A12P48065 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.67■■□□□ 1.06
SLC6A12P48065 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
SLC6A12P48065 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A12P48065 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A12P48065 KRT16P3-201ENST00000439127 1283 ntBASIC21.67■■□□□ 1.06
SLC6A12P48065 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A12P48065 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A12P48065 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.67■■□□□ 1.06
SLC6A12P48065 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SLC6A12P48065 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
SLC6A12P48065 FP325331.1-202ENST00000623531 1380 ntBASIC21.66■■□□□ 1.06
SLC6A12P48065 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.66■■□□□ 1.06
SLC6A12P48065 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.66■■□□□ 1.06
SLC6A12P48065 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SLC6A12P48065 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A12P48065 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.65■■□□□ 1.06
SLC6A12P48065 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A12P48065 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.65■■□□□ 1.06
SLC6A12P48065 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A12P48065 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.65■■□□□ 1.06
SLC6A12P48065 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.65■■□□□ 1.06
SLC6A12P48065 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.65■■□□□ 1.06
SLC6A12P48065 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.65■■□□□ 1.06
SLC6A12P48065 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
SLC6A12P48065 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A12P48065 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.65■■□□□ 1.06
SLC6A12P48065 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
SLC6A12P48065 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.65■■□□□ 1.06
SLC6A12P48065 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.64■■□□□ 1.06
SLC6A12P48065 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.64■■□□□ 1.06
SLC6A12P48065 LINC01529-204ENST00000636474 1715 ntBASIC21.64■■□□□ 1.06
SLC6A12P48065 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.64■■□□□ 1.05
SLC6A12P48065 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.64■■□□□ 1.05
SLC6A12P48065 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.64■■□□□ 1.05
SLC6A12P48065 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
SLC6A12P48065 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SLC6A12P48065 C1orf229-201ENST00000623686 2258 ntBASIC21.64■■□□□ 1.05
SLC6A12P48065 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
SLC6A12P48065 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.64■■□□□ 1.05
SLC6A12P48065 C17orf82-201ENST00000623772 1530 ntBASIC21.64■■□□□ 1.05
SLC6A12P48065 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.64■■□□□ 1.05
SLC6A12P48065 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SLC6A12P48065 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.64■■□□□ 1.05
SLC6A12P48065 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.64■■□□□ 1.05
SLC6A12P48065 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.63■■□□□ 1.05
SLC6A12P48065 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SLC6A12P48065 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SLC6A12P48065 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SLC6A12P48065 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.62■■□□□ 1.05
SLC6A12P48065 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SLC6A12P48065 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.62■■□□□ 1.05
SLC6A12P48065 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.62■■□□□ 1.05
SLC6A12P48065 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.62■■□□□ 1.05
SLC6A12P48065 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SLC6A12P48065 DUX4L4-201ENST00000566884 1269 ntBASIC21.62■■□□□ 1.05
SLC6A12P48065 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms