Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 TRM5YHR070W 1500 nt10.58□□□□□ -0.72
UPF3P48412 AQY1YPR192W 918 nt10.57□□□□□ -0.72
UPF3P48412 YEL076C-AYEL076C-A 651 nt10.56□□□□□ -0.72
UPF3P48412 YEL076CYEL076C 651 nt10.56□□□□□ -0.72
UPF3P48412 YLR464WYLR464W 651 nt10.56□□□□□ -0.72
UPF3P48412 DDR2YOL052C-A 186 nt10.56□□□□□ -0.72
UPF3P48412 YKL030WYKL030W 606 nt10.54□□□□□ -0.72
UPF3P48412 YDL086C-AYDL086C-A 435 nt10.53□□□□□ -0.72
UPF3P48412 RAX1YOR301W 1308 nt10.53□□□□□ -0.72
UPF3P48412 TIM23YNR017W 669 nt10.51□□□□□ -0.73
UPF3P48412 BOR1YNL275W 1731 nt10.49□□□□□ -0.73
UPF3P48412 ANP1YEL036C 1503 nt10.48□□□□□ -0.73
UPF3P48412 ADO1YJR105W 1023 nt10.48□□□□□ -0.73
UPF3P48412 FRE6YLL051C 2139 nt10.46□□□□□ -0.73
UPF3P48412 SPC25YER018C 666 nt10.46□□□□□ -0.73
UPF3P48412 STB1YNL309W 1263 nt10.46□□□□□ -0.73
UPF3P48412 YLR179CYLR179C 606 nt10.45□□□□□ -0.74
UPF3P48412 RPM1RPM1 483 nt10.44□□□□□ -0.74
UPF3P48412 WSC2YNL283C 1512 nt10.43□□□□□ -0.74
UPF3P48412 YDR524C-BYDR524C-B 201 nt10.43□□□□□ -0.74
UPF3P48412 AHT1YHR093W 549 nt10.43□□□□□ -0.74
UPF3P48412 CCA1YER168C 1641 nt10.43□□□□□ -0.74
UPF3P48412 HUA1YGR268C 597 nt10.41□□□□□ -0.74
UPF3P48412 GPI16YHR188C 1833 nt10.41□□□□□ -0.74
UPF3P48412 HSP60YLR259C 1719 nt10.4□□□□□ -0.74
UPF3P48412 FEN2YCR028C 1539 nt10.39□□□□□ -0.75
UPF3P48412 MIC12YBR262C 321 nt10.39□□□□□ -0.75
UPF3P48412 BNA2YJR078W 1362 nt10.39□□□□□ -0.75
UPF3P48412 YPR064WYPR064W 420 nt10.36□□□□□ -0.75
UPF3P48412 FUR4YBR021W 1902 nt10.35□□□□□ -0.75
UPF3P48412 GLK1YCL040W 1503 nt10.34□□□□□ -0.75
UPF3P48412 CCT4YDL143W 1587 nt10.34□□□□□ -0.75
UPF3P48412 VPS60YDR486C 690 nt10.32□□□□□ -0.76
UPF3P48412 TAD3YLR316C 969 nt10.32□□□□□ -0.76
UPF3P48412 YIR016WYIR016W 798 nt10.31□□□□□ -0.76
UPF3P48412 tL(GAG)GtL(GAG)G 82 nt10.27□□□□□ -0.77
UPF3P48412 SWC5YBR231C 912 nt10.27□□□□□ -0.77
UPF3P48412 ALG3YBL082C 1377 nt10.26□□□□□ -0.77
UPF3P48412 HHO1YPL127C 777 nt10.26□□□□□ -0.77
UPF3P48412 AGP1YCL025C 1902 nt10.24□□□□□ -0.77
UPF3P48412 YGR201CYGR201C 678 nt10.22□□□□□ -0.77
UPF3P48412 BDH1YAL060W 1149 nt10.21□□□□□ -0.77
UPF3P48412 PRP4YPR178W 1398 nt10.2□□□□□ -0.78
UPF3P48412 YCL074WYCL074W 927 nt10.17□□□□□ -0.78
UPF3P48412 MCH5YOR306C 1566 nt10.16□□□□□ -0.78
UPF3P48412 XDJ1YLR090W 1380 nt10.15□□□□□ -0.78
UPF3P48412 YDR094WYDR094W 336 nt10.15□□□□□ -0.78
UPF3P48412 DUS1YML080W 1272 nt10.15□□□□□ -0.78
UPF3P48412 YSP3YOR003W 1437 nt10.15□□□□□ -0.79
UPF3P48412 ALG12YNR030W 1656 nt10.13□□□□□ -0.79
UPF3P48412 DPS1YLL018C 1674 nt10.12□□□□□ -0.79
UPF3P48412 YFR018CYFR018C 1092 nt10.12□□□□□ -0.79
UPF3P48412 YKR005CYKR005C 1578 nt10.11□□□□□ -0.79
UPF3P48412 YLR415CYLR415C 339 nt10.11□□□□□ -0.79
UPF3P48412 BMT6YLR063W 1098 nt10.1□□□□□ -0.79
UPF3P48412 AAC1YMR056C 930 nt10.1□□□□□ -0.79
UPF3P48412 UBX6YJL048C 1191 nt10.08□□□□□ -0.8
UPF3P48412 GDH3YAL062W 1374 nt10.06□□□□□ -0.8
UPF3P48412 YGR259CYGR259C 441 nt10.05□□□□□ -0.8
UPF3P48412 PEX25YPL112C 1185 nt10.05□□□□□ -0.8
UPF3P48412 AVT6YER119C 1347 nt10.05□□□□□ -0.8
UPF3P48412 STR3YGL184C 1398 nt10.04□□□□□ -0.8
UPF3P48412 GOR1YNL274C 1053 nt10.04□□□□□ -0.8
UPF3P48412 DUT1YBR252W 444 nt10.04□□□□□ -0.8
UPF3P48412 RDN18-1RDN18-1 1800 nt10.03□□□□□ -0.8
UPF3P48412 RDN18-2RDN18-2 1800 nt10.03□□□□□ -0.8
UPF3P48412 YNL115CYNL115C 1935 nt10.01□□□□□ -0.81
UPF3P48412 YFL066CYFL066C 1179 nt10.01□□□□□ -0.81
UPF3P48412 SHM2YLR058C 1410 nt10□□□□□ -0.81
UPF3P48412 TIM17YJL143W 477 nt10□□□□□ -0.81
UPF3P48412 PRE6YOL038W 765 nt10□□□□□ -0.81
UPF3P48412 IRC24YIR036C 792 nt9.98□□□□□ -0.81
UPF3P48412 DAT1YML113W 747 nt9.95□□□□□ -0.82
UPF3P48412 SNF1YDR477W 1902 nt9.95□□□□□ -0.82
UPF3P48412 AQY2YLL052C 450 nt9.94□□□□□ -0.82
UPF3P48412 RTN2YDL204W 1182 nt9.92□□□□□ -0.82
UPF3P48412 NIT1YIL164C 600 nt9.92□□□□□ -0.82
UPF3P48412 VPS75YNL246W 795 nt9.92□□□□□ -0.82
UPF3P48412 BIO5YNR056C 1686 nt9.9□□□□□ -0.83
UPF3P48412 RRT5YFR032C 870 nt9.89□□□□□ -0.83
UPF3P48412 PAU16YKL224C 372 nt9.89□□□□□ -0.83
UPF3P48412 SGT2YOR007C 1041 nt9.86□□□□□ -0.83
UPF3P48412 YCR102CYCR102C 1107 nt9.85□□□□□ -0.83
UPF3P48412 YFL015W-AYFL015W-A 318 nt9.84□□□□□ -0.83
UPF3P48412 NBP35YGL091C 987 nt9.83□□□□□ -0.84
UPF3P48412 NAR1YNL240C 1476 nt9.83□□□□□ -0.84
UPF3P48412 ARP6YLR085C 1317 nt9.79□□□□□ -0.84
UPF3P48412 MIR1YJR077C 936 nt9.78□□□□□ -0.84
UPF3P48412 PBP1YGR178C 2169 nt9.78□□□□□ -0.84
UPF3P48412 CYT2YKL087C 675 nt9.77□□□□□ -0.85
UPF3P48412 BSP1YPR171W 1731 nt9.74□□□□□ -0.85
UPF3P48412 PLB1YMR008C 1995 nt9.72□□□□□ -0.85
UPF3P48412 YDR010CYDR010C 333 nt9.7□□□□□ -0.86
UPF3P48412 TIR3YIL011W 810 nt9.69□□□□□ -0.86
UPF3P48412 LSC2YGR244C 1284 nt9.68□□□□□ -0.86
UPF3P48412 THI74YDR438W 1113 nt9.66□□□□□ -0.86
UPF3P48412 SHB17YKR043C 816 nt9.65□□□□□ -0.86
UPF3P48412 PAU7YAR020C 168 nt9.65□□□□□ -0.86
UPF3P48412 NAT4YMR069W 858 nt9.63□□□□□ -0.87
UPF3P48412 MSF1YPR047W 1410 nt9.63□□□□□ -0.87
Retrieved 100 of 7,029 protein–RNA pairs in 33.7 ms