Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
BLOC1S4Q9NUP1 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC25.17■■□□□ 1.62
BLOC1S4Q9NUP1 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
BLOC1S4Q9NUP1 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC25.17■■□□□ 1.62
BLOC1S4Q9NUP1 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
BLOC1S4Q9NUP1 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC25.17■■□□□ 1.62
BLOC1S4Q9NUP1 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
BLOC1S4Q9NUP1 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC25.17■■□□□ 1.62
BLOC1S4Q9NUP1 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC25.17■■□□□ 1.62
BLOC1S4Q9NUP1 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
BLOC1S4Q9NUP1 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
BLOC1S4Q9NUP1 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
BLOC1S4Q9NUP1 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
BLOC1S4Q9NUP1 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
BLOC1S4Q9NUP1 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
BLOC1S4Q9NUP1 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
BLOC1S4Q9NUP1 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC25.15■■□□□ 1.62
BLOC1S4Q9NUP1 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
BLOC1S4Q9NUP1 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC25.14■■□□□ 1.62
BLOC1S4Q9NUP1 ME2-208ENST00000638937 2471 ntTSL 5 BASIC25.14■■□□□ 1.61
BLOC1S4Q9NUP1 C9orf163-202ENST00000624034 2573 ntBASIC25.14■■□□□ 1.61
BLOC1S4Q9NUP1 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
BLOC1S4Q9NUP1 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
BLOC1S4Q9NUP1 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC25.13■■□□□ 1.61
BLOC1S4Q9NUP1 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
BLOC1S4Q9NUP1 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
BLOC1S4Q9NUP1 AC009102.2-201ENST00000606772 1639 ntBASIC25.13■■□□□ 1.61
BLOC1S4Q9NUP1 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
BLOC1S4Q9NUP1 GRAMD4P7-201ENST00000578182 1232 ntBASIC25.13■■□□□ 1.61
BLOC1S4Q9NUP1 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.13■■□□□ 1.61
BLOC1S4Q9NUP1 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
BLOC1S4Q9NUP1 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
BLOC1S4Q9NUP1 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
BLOC1S4Q9NUP1 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
BLOC1S4Q9NUP1 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC25.12■■□□□ 1.61
BLOC1S4Q9NUP1 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC25.12■■□□□ 1.61
BLOC1S4Q9NUP1 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC25.12■■□□□ 1.61
BLOC1S4Q9NUP1 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
BLOC1S4Q9NUP1 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
BLOC1S4Q9NUP1 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC25.12■■□□□ 1.61
BLOC1S4Q9NUP1 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.12■■□□□ 1.61
BLOC1S4Q9NUP1 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
BLOC1S4Q9NUP1 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
BLOC1S4Q9NUP1 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
BLOC1S4Q9NUP1 AL356441.2-201ENST00000443009 864 ntBASIC25.11■■□□□ 1.61
BLOC1S4Q9NUP1 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC25.11■■□□□ 1.61
BLOC1S4Q9NUP1 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC25.11■■□□□ 1.61
BLOC1S4Q9NUP1 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
BLOC1S4Q9NUP1 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
BLOC1S4Q9NUP1 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC25.11■■□□□ 1.61
BLOC1S4Q9NUP1 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
BLOC1S4Q9NUP1 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.1■■□□□ 1.61
BLOC1S4Q9NUP1 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC25.1■■□□□ 1.61
BLOC1S4Q9NUP1 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC25.1■■□□□ 1.61
BLOC1S4Q9NUP1 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
BLOC1S4Q9NUP1 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
BLOC1S4Q9NUP1 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.1■■□□□ 1.61
BLOC1S4Q9NUP1 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
BLOC1S4Q9NUP1 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC25.1■■□□□ 1.61
BLOC1S4Q9NUP1 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC25.1■■□□□ 1.61
BLOC1S4Q9NUP1 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
BLOC1S4Q9NUP1 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
BLOC1S4Q9NUP1 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
BLOC1S4Q9NUP1 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.09■■□□□ 1.61
BLOC1S4Q9NUP1 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
BLOC1S4Q9NUP1 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
BLOC1S4Q9NUP1 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
BLOC1S4Q9NUP1 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
BLOC1S4Q9NUP1 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
BLOC1S4Q9NUP1 AL117332.1-201ENST00000622628 974 ntBASIC25.08■■□□□ 1.61
BLOC1S4Q9NUP1 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC25.08■■□□□ 1.61
BLOC1S4Q9NUP1 AC144652.1-201ENST00000609974 1624 ntBASIC25.08■■□□□ 1.6
BLOC1S4Q9NUP1 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC25.07■■□□□ 1.6
BLOC1S4Q9NUP1 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
BLOC1S4Q9NUP1 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC25.07■■□□□ 1.6
BLOC1S4Q9NUP1 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC25.07■■□□□ 1.6
BLOC1S4Q9NUP1 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
BLOC1S4Q9NUP1 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.07■■□□□ 1.6
BLOC1S4Q9NUP1 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
BLOC1S4Q9NUP1 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
BLOC1S4Q9NUP1 AL353803.4-201ENST00000565882 1934 ntBASIC25.06■■□□□ 1.6
BLOC1S4Q9NUP1 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
BLOC1S4Q9NUP1 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC25.06■■□□□ 1.6
BLOC1S4Q9NUP1 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
BLOC1S4Q9NUP1 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC25.06■■□□□ 1.6
BLOC1S4Q9NUP1 MIR3621-201ENST00000580529 85 ntBASIC25.06■■□□□ 1.6
BLOC1S4Q9NUP1 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC25.06■■□□□ 1.6
BLOC1S4Q9NUP1 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC25.06■■□□□ 1.6
BLOC1S4Q9NUP1 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
BLOC1S4Q9NUP1 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
BLOC1S4Q9NUP1 LTK-203ENST00000453182 2412 ntTSL 2 BASIC25.05■■□□□ 1.6
BLOC1S4Q9NUP1 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
BLOC1S4Q9NUP1 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
BLOC1S4Q9NUP1 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
BLOC1S4Q9NUP1 AC068473.5-201ENST00000616428 2072 ntBASIC25.05■■□□□ 1.6
BLOC1S4Q9NUP1 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
BLOC1S4Q9NUP1 NKILA-201ENST00000613231 537 ntTSL 4 BASIC25.05■■□□□ 1.6
BLOC1S4Q9NUP1 RASSF1-AS1-201ENST00000629828 790 ntBASIC25.05■■□□□ 1.6
BLOC1S4Q9NUP1 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
BLOC1S4Q9NUP1 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC25.05■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms