Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
HMGCS2P54868 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
HMGCS2P54868 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
HMGCS2P54868 BX842568.3-201ENST00000418104 571 ntBASIC26.48■■□□□ 1.83
HMGCS2P54868 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
HMGCS2P54868 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC26.48■■□□□ 1.83
HMGCS2P54868 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
HMGCS2P54868 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
HMGCS2P54868 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
HMGCS2P54868 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC26.46■■□□□ 1.83
HMGCS2P54868 GRAMD4P2-201ENST00000423297 1097 ntBASIC26.46■■□□□ 1.83
HMGCS2P54868 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC26.46■■□□□ 1.83
HMGCS2P54868 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
HMGCS2P54868 MPST-208ENST00000628507 698 ntTSL 5 BASIC26.46■■□□□ 1.83
HMGCS2P54868 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
HMGCS2P54868 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
HMGCS2P54868 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC26.45■■□□□ 1.82
HMGCS2P54868 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC26.45■■□□□ 1.82
HMGCS2P54868 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
HMGCS2P54868 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC26.44■■□□□ 1.82
HMGCS2P54868 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
HMGCS2P54868 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
HMGCS2P54868 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC26.44■■□□□ 1.82
HMGCS2P54868 GLI3-203ENST00000437480 451 ntTSL 2 BASIC26.44■■□□□ 1.82
HMGCS2P54868 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
HMGCS2P54868 AL161729.1-201ENST00000604104 1402 ntBASIC26.44■■□□□ 1.82
HMGCS2P54868 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
HMGCS2P54868 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
HMGCS2P54868 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
HMGCS2P54868 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
HMGCS2P54868 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
HMGCS2P54868 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
HMGCS2P54868 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
HMGCS2P54868 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
HMGCS2P54868 SNX3-202ENST00000349379 890 ntTSL 2 BASIC26.43■■□□□ 1.82
HMGCS2P54868 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC26.43■■□□□ 1.82
HMGCS2P54868 pRNA.6-201ENST00000610482 90 ntBASIC26.43■■□□□ 1.82
HMGCS2P54868 pRNA.5-201ENST00000612139 90 ntBASIC26.43■■□□□ 1.82
HMGCS2P54868 SP2-202ENST00000613139 908 ntTSL 5 BASIC26.43■■□□□ 1.82
HMGCS2P54868 pRNA.11-201ENST00000618423 90 ntBASIC26.43■■□□□ 1.82
HMGCS2P54868 pRNA.13-201ENST00000619112 90 ntBASIC26.43■■□□□ 1.82
HMGCS2P54868 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
HMGCS2P54868 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
HMGCS2P54868 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC26.43■■□□□ 1.82
HMGCS2P54868 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC26.43■■□□□ 1.82
HMGCS2P54868 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC26.42■■□□□ 1.82
HMGCS2P54868 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
HMGCS2P54868 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC26.42■■□□□ 1.82
HMGCS2P54868 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
HMGCS2P54868 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
HMGCS2P54868 GTSE1-AS1-202ENST00000623117 1518 ntBASIC26.41■■□□□ 1.82
HMGCS2P54868 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
HMGCS2P54868 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
HMGCS2P54868 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.41■■□□□ 1.82
HMGCS2P54868 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC26.4■■□□□ 1.82
HMGCS2P54868 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
HMGCS2P54868 ALDH1A3-203ENST00000557963 1670 ntBASIC26.4■■□□□ 1.82
HMGCS2P54868 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
HMGCS2P54868 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC26.39■■□□□ 1.82
HMGCS2P54868 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
HMGCS2P54868 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
HMGCS2P54868 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
HMGCS2P54868 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
HMGCS2P54868 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
HMGCS2P54868 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC26.39■■□□□ 1.82
HMGCS2P54868 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC26.39■■□□□ 1.82
HMGCS2P54868 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
HMGCS2P54868 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.81
HMGCS2P54868 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
HMGCS2P54868 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
HMGCS2P54868 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
HMGCS2P54868 AC126544.1-201ENST00000580842 1059 ntBASIC26.38■■□□□ 1.81
HMGCS2P54868 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
HMGCS2P54868 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
HMGCS2P54868 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
HMGCS2P54868 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC26.38■■□□□ 1.81
HMGCS2P54868 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC26.37■■□□□ 1.81
HMGCS2P54868 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
HMGCS2P54868 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC26.37■■□□□ 1.81
HMGCS2P54868 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
HMGCS2P54868 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
HMGCS2P54868 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
HMGCS2P54868 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
HMGCS2P54868 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
HMGCS2P54868 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC26.36■■□□□ 1.81
HMGCS2P54868 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC26.36■■□□□ 1.81
HMGCS2P54868 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC26.36■■□□□ 1.81
HMGCS2P54868 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
HMGCS2P54868 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
HMGCS2P54868 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
HMGCS2P54868 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HMGCS2P54868 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
HMGCS2P54868 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
HMGCS2P54868 AK1-201ENST00000223836 736 ntTSL 3 BASIC26.35■■□□□ 1.81
HMGCS2P54868 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
HMGCS2P54868 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
HMGCS2P54868 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
HMGCS2P54868 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
HMGCS2P54868 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HMGCS2P54868 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms