Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TIMP4Q99727 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
TIMP4Q99727 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.92■□□□□ 0.94
TIMP4Q99727 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.92■□□□□ 0.94
TIMP4Q99727 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TIMP4Q99727 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.92■□□□□ 0.94
TIMP4Q99727 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.92■□□□□ 0.94
TIMP4Q99727 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.92■□□□□ 0.94
TIMP4Q99727 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.92■□□□□ 0.94
TIMP4Q99727 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TIMP4Q99727 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TIMP4Q99727 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TIMP4Q99727 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TIMP4Q99727 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TIMP4Q99727 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TIMP4Q99727 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
TIMP4Q99727 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TIMP4Q99727 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TIMP4Q99727 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TIMP4Q99727 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.91■□□□□ 0.94
TIMP4Q99727 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
TIMP4Q99727 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.91■□□□□ 0.94
TIMP4Q99727 MIR6724-1-201ENST00000616420 92 ntBASIC20.91■□□□□ 0.94
TIMP4Q99727 MIR6724-2-201ENST00000616483 92 ntBASIC20.91■□□□□ 0.94
TIMP4Q99727 MIR6724-4-201ENST00000617390 92 ntBASIC20.91■□□□□ 0.94
TIMP4Q99727 AC008406.3-201ENST00000620001 1374 ntBASIC20.91■□□□□ 0.94
TIMP4Q99727 MIR6724-3-201ENST00000622482 92 ntBASIC20.91■□□□□ 0.94
TIMP4Q99727 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TIMP4Q99727 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.9■□□□□ 0.94
TIMP4Q99727 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.9■□□□□ 0.94
TIMP4Q99727 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TIMP4Q99727 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.9■□□□□ 0.94
TIMP4Q99727 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TIMP4Q99727 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.89■□□□□ 0.94
TIMP4Q99727 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.89■□□□□ 0.94
TIMP4Q99727 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TIMP4Q99727 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
TIMP4Q99727 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.89■□□□□ 0.93
TIMP4Q99727 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
TIMP4Q99727 SNX5-217ENST00000606557 1087 ntBASIC20.89■□□□□ 0.93
TIMP4Q99727 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TIMP4Q99727 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TIMP4Q99727 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
TIMP4Q99727 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.88■□□□□ 0.93
TIMP4Q99727 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.88■□□□□ 0.93
TIMP4Q99727 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TIMP4Q99727 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TIMP4Q99727 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TIMP4Q99727 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TIMP4Q99727 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TIMP4Q99727 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
TIMP4Q99727 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
TIMP4Q99727 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TIMP4Q99727 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TIMP4Q99727 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TIMP4Q99727 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.87■□□□□ 0.93
TIMP4Q99727 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.87■□□□□ 0.93
TIMP4Q99727 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.87■□□□□ 0.93
TIMP4Q99727 MIR6089-201ENST00000616698 64 ntBASIC20.87■□□□□ 0.93
TIMP4Q99727 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TIMP4Q99727 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TIMP4Q99727 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.86■□□□□ 0.93
TIMP4Q99727 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.86■□□□□ 0.93
TIMP4Q99727 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.86■□□□□ 0.93
TIMP4Q99727 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.86■□□□□ 0.93
TIMP4Q99727 AL117332.1-201ENST00000622628 974 ntBASIC20.86■□□□□ 0.93
TIMP4Q99727 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
TIMP4Q99727 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
TIMP4Q99727 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TIMP4Q99727 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.86■□□□□ 0.93
TIMP4Q99727 DUSP8P5-201ENST00000422884 1815 ntBASIC20.85■□□□□ 0.93
TIMP4Q99727 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
TIMP4Q99727 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.85■□□□□ 0.93
TIMP4Q99727 ABCB10P4-201ENST00000566803 2184 ntBASIC20.85■□□□□ 0.93
TIMP4Q99727 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TIMP4Q99727 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TIMP4Q99727 MIR3621-201ENST00000580529 85 ntBASIC20.85■□□□□ 0.93
TIMP4Q99727 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.85■□□□□ 0.93
TIMP4Q99727 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.85■□□□□ 0.93
TIMP4Q99727 MIR6722-201ENST00000617286 78 ntBASIC20.85■□□□□ 0.93
TIMP4Q99727 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.85■□□□□ 0.93
TIMP4Q99727 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TIMP4Q99727 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.85■□□□□ 0.93
TIMP4Q99727 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.85■□□□□ 0.93
TIMP4Q99727 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.85■□□□□ 0.93
TIMP4Q99727 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TIMP4Q99727 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TIMP4Q99727 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TIMP4Q99727 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.85■□□□□ 0.93
TIMP4Q99727 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TIMP4Q99727 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TIMP4Q99727 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.84■□□□□ 0.93
TIMP4Q99727 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.84■□□□□ 0.93
TIMP4Q99727 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.84■□□□□ 0.93
TIMP4Q99727 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.84■□□□□ 0.93
TIMP4Q99727 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.84■□□□□ 0.93
TIMP4Q99727 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TIMP4Q99727 AL356740.2-201ENST00000601559 647 ntBASIC20.84■□□□□ 0.93
TIMP4Q99727 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TIMP4Q99727 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms