Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 AC090192.1-201ENST00000517740 490 ntBASIC25.23■■□□□ 1.63
HIPK3Q9H422 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC25.23■■□□□ 1.63
HIPK3Q9H422 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
HIPK3Q9H422 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
HIPK3Q9H422 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
HIPK3Q9H422 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
HIPK3Q9H422 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC25.22■■□□□ 1.63
HIPK3Q9H422 BX842568.3-201ENST00000418104 571 ntBASIC25.22■■□□□ 1.63
HIPK3Q9H422 AC006455.2-201ENST00000429931 906 ntBASIC25.22■■□□□ 1.63
HIPK3Q9H422 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC25.22■■□□□ 1.63
HIPK3Q9H422 RARRES2P11-201ENST00000635158 484 ntBASIC25.22■■□□□ 1.63
HIPK3Q9H422 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
HIPK3Q9H422 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
HIPK3Q9H422 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
HIPK3Q9H422 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
HIPK3Q9H422 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
HIPK3Q9H422 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
HIPK3Q9H422 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.21■■□□□ 1.63
HIPK3Q9H422 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
HIPK3Q9H422 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
HIPK3Q9H422 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC25.2■■□□□ 1.62
HIPK3Q9H422 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC25.2■■□□□ 1.62
HIPK3Q9H422 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
HIPK3Q9H422 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
HIPK3Q9H422 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
HIPK3Q9H422 AC034268.1-201ENST00000441047 882 ntBASIC25.2■■□□□ 1.62
HIPK3Q9H422 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
HIPK3Q9H422 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
HIPK3Q9H422 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
HIPK3Q9H422 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
HIPK3Q9H422 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC25.19■■□□□ 1.62
HIPK3Q9H422 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC25.19■■□□□ 1.62
HIPK3Q9H422 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC25.19■■□□□ 1.62
HIPK3Q9H422 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC25.19■■□□□ 1.62
HIPK3Q9H422 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC25.19■■□□□ 1.62
HIPK3Q9H422 AC009086.3-201ENST00000623486 1008 ntBASIC25.19■■□□□ 1.62
HIPK3Q9H422 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC25.19■■□□□ 1.62
HIPK3Q9H422 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
HIPK3Q9H422 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC25.19■■□□□ 1.62
HIPK3Q9H422 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC25.18■■□□□ 1.62
HIPK3Q9H422 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.18■■□□□ 1.62
HIPK3Q9H422 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC25.18■■□□□ 1.62
HIPK3Q9H422 MIR3181-201ENST00000578512 73 ntBASIC25.18■■□□□ 1.62
HIPK3Q9H422 IKBKGP1-201ENST00000612193 1073 ntBASIC25.18■■□□□ 1.62
HIPK3Q9H422 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC25.17■■□□□ 1.62
HIPK3Q9H422 AL022069.1-201ENST00000568025 1636 ntBASIC25.17■■□□□ 1.62
HIPK3Q9H422 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC25.17■■□□□ 1.62
HIPK3Q9H422 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
HIPK3Q9H422 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
HIPK3Q9H422 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC25.17■■□□□ 1.62
HIPK3Q9H422 AC022517.1-201ENST00000592429 346 ntBASIC25.17■■□□□ 1.62
HIPK3Q9H422 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC25.17■■□□□ 1.62
HIPK3Q9H422 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.17■■□□□ 1.62
HIPK3Q9H422 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC25.17■■□□□ 1.62
HIPK3Q9H422 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
HIPK3Q9H422 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
HIPK3Q9H422 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
HIPK3Q9H422 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
HIPK3Q9H422 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC25.16■■□□□ 1.62
HIPK3Q9H422 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
HIPK3Q9H422 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.16■■□□□ 1.62
HIPK3Q9H422 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
HIPK3Q9H422 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HIPK3Q9H422 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC25.15■■□□□ 1.62
HIPK3Q9H422 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HIPK3Q9H422 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
HIPK3Q9H422 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HIPK3Q9H422 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC25.15■■□□□ 1.62
HIPK3Q9H422 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HIPK3Q9H422 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC25.15■■□□□ 1.62
HIPK3Q9H422 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC25.15■■□□□ 1.62
HIPK3Q9H422 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HIPK3Q9H422 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
HIPK3Q9H422 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
HIPK3Q9H422 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.14■■□□□ 1.62
HIPK3Q9H422 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
HIPK3Q9H422 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
HIPK3Q9H422 HACD1-201ENST00000326961 773 ntTSL 2 BASIC25.14■■□□□ 1.62
HIPK3Q9H422 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
HIPK3Q9H422 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
HIPK3Q9H422 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC25.14■■□□□ 1.62
HIPK3Q9H422 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
HIPK3Q9H422 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
HIPK3Q9H422 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC25.13■■□□□ 1.61
HIPK3Q9H422 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC25.13■■□□□ 1.61
HIPK3Q9H422 AL137784.2-201ENST00000607332 1000 ntBASIC25.13■■□□□ 1.61
HIPK3Q9H422 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
HIPK3Q9H422 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.13■■□□□ 1.61
HIPK3Q9H422 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
HIPK3Q9H422 KRT18P5-201ENST00000436075 1291 ntBASIC25.12■■□□□ 1.61
HIPK3Q9H422 YBX1P1-201ENST00000445822 960 ntBASIC25.12■■□□□ 1.61
HIPK3Q9H422 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC25.12■■□□□ 1.61
HIPK3Q9H422 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
HIPK3Q9H422 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
HIPK3Q9H422 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC25.12■■□□□ 1.61
HIPK3Q9H422 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC25.12■■□□□ 1.61
HIPK3Q9H422 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
HIPK3Q9H422 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.11■■□□□ 1.61
HIPK3Q9H422 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
HIPK3Q9H422 SNX3-202ENST00000349379 890 ntTSL 2 BASIC25.11■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms