Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
NEK3P51956 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC23.55■■□□□ 1.36
NEK3P51956 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NEK3P51956 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NEK3P51956 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
NEK3P51956 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.55■■□□□ 1.36
NEK3P51956 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
NEK3P51956 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.54■■□□□ 1.36
NEK3P51956 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NEK3P51956 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NEK3P51956 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NEK3P51956 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.54■■□□□ 1.36
NEK3P51956 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.54■■□□□ 1.36
NEK3P51956 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC23.54■■□□□ 1.36
NEK3P51956 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC23.54■■□□□ 1.36
NEK3P51956 AC131212.1-201ENST00000613771 668 ntBASIC23.54■■□□□ 1.36
NEK3P51956 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NEK3P51956 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NEK3P51956 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NEK3P51956 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC23.53■■□□□ 1.36
NEK3P51956 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
NEK3P51956 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.53■■□□□ 1.36
NEK3P51956 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC23.53■■□□□ 1.36
NEK3P51956 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.53■■□□□ 1.36
NEK3P51956 UNC93B8-201ENST00000511903 705 ntBASIC23.53■■□□□ 1.36
NEK3P51956 GRAMD4P7-201ENST00000578182 1232 ntBASIC23.53■■□□□ 1.36
NEK3P51956 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
NEK3P51956 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.53■■□□□ 1.36
NEK3P51956 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.53■■□□□ 1.36
NEK3P51956 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
NEK3P51956 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
NEK3P51956 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
NEK3P51956 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.52■■□□□ 1.36
NEK3P51956 TSPY9P-201ENST00000440215 945 ntBASIC23.52■■□□□ 1.36
NEK3P51956 TSPY11P-201ENST00000442607 1045 ntBASIC23.52■■□□□ 1.36
NEK3P51956 AC092028.1-203ENST00000608262 953 ntBASIC23.52■■□□□ 1.36
NEK3P51956 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC23.52■■□□□ 1.36
NEK3P51956 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
NEK3P51956 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.35
NEK3P51956 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
NEK3P51956 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.51■■□□□ 1.35
NEK3P51956 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.51■■□□□ 1.35
NEK3P51956 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
NEK3P51956 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.51■■□□□ 1.35
NEK3P51956 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
NEK3P51956 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
NEK3P51956 AC004812.2-201ENST00000611079 2094 ntBASIC23.51■■□□□ 1.35
NEK3P51956 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
NEK3P51956 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
NEK3P51956 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.5■■□□□ 1.35
NEK3P51956 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
NEK3P51956 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
NEK3P51956 KRT16P3-201ENST00000439127 1283 ntBASIC23.5■■□□□ 1.35
NEK3P51956 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.5■■□□□ 1.35
NEK3P51956 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
NEK3P51956 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC23.5■■□□□ 1.35
NEK3P51956 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
NEK3P51956 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
NEK3P51956 AF131216.4-201ENST00000638924 1588 ntBASIC23.49■■□□□ 1.35
NEK3P51956 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
NEK3P51956 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
NEK3P51956 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.49■■□□□ 1.35
NEK3P51956 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC23.49■■□□□ 1.35
NEK3P51956 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NEK3P51956 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NEK3P51956 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NEK3P51956 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
NEK3P51956 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.48■■□□□ 1.35
NEK3P51956 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
NEK3P51956 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
NEK3P51956 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NEK3P51956 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC23.48■■□□□ 1.35
NEK3P51956 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
NEK3P51956 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.48■■□□□ 1.35
NEK3P51956 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
NEK3P51956 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NEK3P51956 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NEK3P51956 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.47■■□□□ 1.35
NEK3P51956 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.47■■□□□ 1.35
NEK3P51956 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.47■■□□□ 1.35
NEK3P51956 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.47■■□□□ 1.35
NEK3P51956 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NEK3P51956 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NEK3P51956 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC23.47■■□□□ 1.35
NEK3P51956 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.47■■□□□ 1.35
NEK3P51956 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
NEK3P51956 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
NEK3P51956 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
NEK3P51956 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
NEK3P51956 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
NEK3P51956 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
NEK3P51956 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.46■■□□□ 1.35
NEK3P51956 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
NEK3P51956 MIR6089-201ENST00000616698 64 ntBASIC23.46■■□□□ 1.35
NEK3P51956 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.46■■□□□ 1.35
NEK3P51956 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
NEK3P51956 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.45■■□□□ 1.35
NEK3P51956 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.45■■□□□ 1.35
NEK3P51956 DUSP8P5-201ENST00000422884 1815 ntBASIC23.45■■□□□ 1.34
NEK3P51956 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.45■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms