Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MIR6724-3-201ENST00000622482 92 ntBASIC24.5■■□□□ 1.51
HMGA1P17096 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC24.5■■□□□ 1.51
HMGA1P17096 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC24.5■■□□□ 1.51
HMGA1P17096 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
HMGA1P17096 LSM7-203ENST00000585409 512 ntTSL 2 BASIC24.49■■□□□ 1.51
HMGA1P17096 AL117332.1-201ENST00000622628 974 ntBASIC24.49■■□□□ 1.51
HMGA1P17096 EXOG-217ENST00000630638 197 ntTSL 5 BASIC24.49■■□□□ 1.51
HMGA1P17096 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
HMGA1P17096 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC24.49■■□□□ 1.51
HMGA1P17096 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
HMGA1P17096 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC24.49■■□□□ 1.51
HMGA1P17096 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
HMGA1P17096 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
HMGA1P17096 SLC6A10P-202ENST00000431994 2058 ntBASIC24.48■■□□□ 1.51
HMGA1P17096 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
HMGA1P17096 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC24.48■■□□□ 1.51
HMGA1P17096 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC24.47■■□□□ 1.51
HMGA1P17096 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
HMGA1P17096 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
HMGA1P17096 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
HMGA1P17096 PEMT-206ENST00000435340 960 ntTSL 5 BASIC24.47■■□□□ 1.51
HMGA1P17096 MIR3621-201ENST00000580529 85 ntBASIC24.47■■□□□ 1.51
HMGA1P17096 SNX5-217ENST00000606557 1087 ntBASIC24.47■■□□□ 1.51
HMGA1P17096 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
HMGA1P17096 AC145676.1-201ENST00000514988 2004 ntBASIC24.46■■□□□ 1.51
HMGA1P17096 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
HMGA1P17096 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
HMGA1P17096 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC24.46■■□□□ 1.51
HMGA1P17096 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
HMGA1P17096 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
HMGA1P17096 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
HMGA1P17096 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
HMGA1P17096 LBH-205ENST00000407930 756 ntTSL 2 BASIC24.45■■□□□ 1.5
HMGA1P17096 RPP21-222ENST00000433076 577 ntTSL 2 BASIC24.45■■□□□ 1.5
HMGA1P17096 AC131281.2-201ENST00000520478 145 ntBASIC24.45■■□□□ 1.5
HMGA1P17096 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC24.45■■□□□ 1.5
HMGA1P17096 SRR-208ENST00000576848 588 ntTSL 4 BASIC24.45■■□□□ 1.5
HMGA1P17096 TRIR-202ENST00000588213 841 ntTSL 3 BASIC24.45■■□□□ 1.5
HMGA1P17096 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
HMGA1P17096 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC24.45■■□□□ 1.5
HMGA1P17096 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
HMGA1P17096 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGA1P17096 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
HMGA1P17096 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
HMGA1P17096 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
HMGA1P17096 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
HMGA1P17096 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
HMGA1P17096 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
HMGA1P17096 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
HMGA1P17096 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC24.43■■□□□ 1.5
HMGA1P17096 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC24.42■■□□□ 1.5
HMGA1P17096 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC24.42■■□□□ 1.5
HMGA1P17096 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC24.42■■□□□ 1.5
HMGA1P17096 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
HMGA1P17096 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC24.42■■□□□ 1.5
HMGA1P17096 CLTA-206ENST00000466396 695 ntTSL 2 BASIC24.42■■□□□ 1.5
HMGA1P17096 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGA1P17096 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGA1P17096 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGA1P17096 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGA1P17096 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
HMGA1P17096 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
HMGA1P17096 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
HMGA1P17096 CD72-202ENST00000378430 585 ntTSL 3 BASIC24.41■■□□□ 1.5
HMGA1P17096 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC24.41■■□□□ 1.5
HMGA1P17096 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
HMGA1P17096 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC24.41■■□□□ 1.5
HMGA1P17096 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.4■■□□□ 1.5
HMGA1P17096 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
HMGA1P17096 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
HMGA1P17096 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC24.4■■□□□ 1.5
HMGA1P17096 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC24.4■■□□□ 1.5
HMGA1P17096 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC24.4■■□□□ 1.5
HMGA1P17096 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.5
HMGA1P17096 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC24.39■■□□□ 1.5
HMGA1P17096 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.49
HMGA1P17096 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC24.39■■□□□ 1.49
HMGA1P17096 MIR6722-201ENST00000617286 78 ntBASIC24.39■■□□□ 1.49
HMGA1P17096 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC24.39■■□□□ 1.49
HMGA1P17096 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
HMGA1P17096 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
HMGA1P17096 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
HMGA1P17096 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC24.38■■□□□ 1.49
HMGA1P17096 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC24.38■■□□□ 1.49
HMGA1P17096 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC24.38■■□□□ 1.49
HMGA1P17096 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC24.38■■□□□ 1.49
HMGA1P17096 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC24.38■■□□□ 1.49
HMGA1P17096 AL356740.2-201ENST00000601559 647 ntBASIC24.38■■□□□ 1.49
HMGA1P17096 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC24.38■■□□□ 1.49
HMGA1P17096 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
HMGA1P17096 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
HMGA1P17096 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC24.38■■□□□ 1.49
HMGA1P17096 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
HMGA1P17096 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
HMGA1P17096 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
HMGA1P17096 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
HMGA1P17096 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
HMGA1P17096 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC24.37■■□□□ 1.49
HMGA1P17096 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC24.37■■□□□ 1.49
HMGA1P17096 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms