Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LMX1BO60663 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.47■□□□□ 0.87
LMX1BO60663 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.47■□□□□ 0.87
LMX1BO60663 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1BO60663 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.47■□□□□ 0.87
LMX1BO60663 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1BO60663 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1BO60663 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1BO60663 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1BO60663 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1BO60663 KRT8P33-201ENST00000508125 1423 ntBASIC20.46■□□□□ 0.87
LMX1BO60663 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1BO60663 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1BO60663 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1BO60663 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1BO60663 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.46■□□□□ 0.87
LMX1BO60663 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.46■□□□□ 0.87
LMX1BO60663 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.46■□□□□ 0.87
LMX1BO60663 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LMX1BO60663 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
LMX1BO60663 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.87
LMX1BO60663 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.45■□□□□ 0.87
LMX1BO60663 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LMX1BO60663 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
LMX1BO60663 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LMX1BO60663 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LMX1BO60663 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.45■□□□□ 0.86
LMX1BO60663 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LMX1BO60663 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
LMX1BO60663 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.45■□□□□ 0.86
LMX1BO60663 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.44■□□□□ 0.86
LMX1BO60663 LINC00543-201ENST00000567234 1845 ntBASIC20.44■□□□□ 0.86
LMX1BO60663 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LMX1BO60663 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LMX1BO60663 YBX1P4-201ENST00000392794 808 ntBASIC20.44■□□□□ 0.86
LMX1BO60663 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.44■□□□□ 0.86
LMX1BO60663 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
LMX1BO60663 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
LMX1BO60663 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.44■□□□□ 0.86
LMX1BO60663 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LMX1BO60663 RAP2CP1-202ENST00000605179 643 ntBASIC20.44■□□□□ 0.86
LMX1BO60663 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LMX1BO60663 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
LMX1BO60663 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LMX1BO60663 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LMX1BO60663 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LMX1BO60663 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.43■□□□□ 0.86
LMX1BO60663 MIR6765-201ENST00000614092 87 ntBASIC20.43■□□□□ 0.86
LMX1BO60663 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LMX1BO60663 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.43■□□□□ 0.86
LMX1BO60663 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
LMX1BO60663 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.43■□□□□ 0.86
LMX1BO60663 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
LMX1BO60663 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LMX1BO60663 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LMX1BO60663 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.42■□□□□ 0.86
LMX1BO60663 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LMX1BO60663 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.42■□□□□ 0.86
LMX1BO60663 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1BO60663 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.41■□□□□ 0.86
LMX1BO60663 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.41■□□□□ 0.86
LMX1BO60663 SPCS2P3-201ENST00000500401 656 ntBASIC20.41■□□□□ 0.86
LMX1BO60663 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1BO60663 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1BO60663 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1BO60663 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1BO60663 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1BO60663 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LMX1BO60663 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LMX1BO60663 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.4■□□□□ 0.86
LMX1BO60663 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
LMX1BO60663 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
LMX1BO60663 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LMX1BO60663 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LMX1BO60663 AC018755.3-202ENST00000596210 929 ntBASIC20.4■□□□□ 0.86
LMX1BO60663 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LMX1BO60663 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
LMX1BO60663 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LMX1BO60663 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LMX1BO60663 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.39■□□□□ 0.86
LMX1BO60663 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LMX1BO60663 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
LMX1BO60663 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LMX1BO60663 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.39■□□□□ 0.86
LMX1BO60663 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1BO60663 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1BO60663 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1BO60663 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1BO60663 AC009299.2-201ENST00000482477 511 ntBASIC20.39■□□□□ 0.85
LMX1BO60663 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.39■□□□□ 0.85
LMX1BO60663 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1BO60663 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.39■□□□□ 0.85
LMX1BO60663 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1BO60663 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.38■□□□□ 0.85
LMX1BO60663 AL592295.1-201ENST00000400984 884 ntBASIC20.38■□□□□ 0.85
LMX1BO60663 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
LMX1BO60663 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LMX1BO60663 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1BO60663 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1BO60663 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms