Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 HSP90AB1-203ENST00000371646 2572 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.051e-14■■□□□ 11.6
LIN28BQ6ZN17 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.051e-6■■□□□ 11.6
LIN28BQ6ZN17 DNAJB9-202ENST00000465725 343 ntTSL 22.84□□□□□ -1.951e-6■■□□□ 11.6
LIN28BQ6ZN17 VTRNA1-2-201ENST00000365241 89 ntBASIC8.26□□□□□ -1.091e-323■■□□□ 11.6
LIN28BQ6ZN17 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.352e-9■■□□□ 11.6
LIN28BQ6ZN17 PTPN23-206ENST00000602307 5119 ntTSL 211.62□□□□□ -0.552e-9■■□□□ 11.6
LIN28BQ6ZN17 TAF12-204ENST00000495422 624 ntTSL 516.73■□□□□ 0.271e-8■■□□□ 11.6
LIN28BQ6ZN17 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.698e-7■■□□□ 11.6
LIN28BQ6ZN17 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.668e-7■■□□□ 11.6
LIN28BQ6ZN17 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.21■□□□□ 0.994e-7■■□□□ 11.6
LIN28BQ6ZN17 AC079781.5-203ENST00000641315 2059 nt19.73■□□□□ 0.754e-7■■□□□ 11.6
LIN28BQ6ZN17 AC079781.5-201ENST00000641390 3211 nt17.47■□□□□ 0.394e-7■■□□□ 11.6
LIN28BQ6ZN17 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.084e-7■■□□□ 11.6
LIN28BQ6ZN17 AC079781.5-202ENST00000641784 3743 ntBASIC14.08□□□□□ -0.154e-7■■□□□ 11.6
LIN28BQ6ZN17 ASNS-203ENST00000394309 2289 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.414e-7■■□□□ 11.6
LIN28BQ6ZN17 ASNS-205ENST00000422745 1865 ntTSL 5 BASIC10.87□□□□□ -0.674e-7■■□□□ 11.6
LIN28BQ6ZN17 ASNS-202ENST00000394308 1994 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.714e-7■■□□□ 11.6
LIN28BQ6ZN17 ASNS-213ENST00000454046 1947 ntTSL 59.07□□□□□ -0.964e-7■■□□□ 11.6
LIN28BQ6ZN17 ASNS-214ENST00000455086 1588 ntTSL 2 BASIC8.56□□□□□ -1.044e-7■■□□□ 11.6
LIN28BQ6ZN17 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6□□□□□ -1.454e-7■■□□□ 11.6
LIN28BQ6ZN17 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.061e-8■■□□□ 11.6
LIN28BQ6ZN17 HNRNPK-201ENST00000351839 2652 ntAPPRIS ALT1 TSL 1 (best) BASIC9.07□□□□□ -0.961e-8■■□□□ 11.6
LIN28BQ6ZN17 HNRNPK-205ENST00000376281 2928 ntAPPRIS P4 TSL 1 (best) BASIC8.19□□□□□ -1.11e-8■■□□□ 11.6
LIN28BQ6ZN17 TPST2-205ENST00000442495 586 ntTSL 224.84■■□□□ 1.573e-6■■□□□ 11.6
LIN28BQ6ZN17 TPST2-209ENST00000454778 582 ntTSL 424.03■■□□□ 1.443e-6■■□□□ 11.6
LIN28BQ6ZN17 TPST2-208ENST00000453117 514 ntTSL 423.91■■□□□ 1.423e-6■■□□□ 11.6
LIN28BQ6ZN17 TPST2-207ENST00000450022 544 ntTSL 323.25■■□□□ 1.313e-6■■□□□ 11.6
LIN28BQ6ZN17 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.173e-6■■□□□ 11.6
LIN28BQ6ZN17 TPST2-204ENST00000440953 544 ntTSL 520.75■□□□□ 0.913e-6■■□□□ 11.6
LIN28BQ6ZN17 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.883e-6■■□□□ 11.6
LIN28BQ6ZN17 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.34■■□□□ 1.014e-6■■□□□ 11.6
LIN28BQ6ZN17 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.54■□□□□ 0.884e-6■■□□□ 11.6
LIN28BQ6ZN17 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.814e-6■■□□□ 11.6
LIN28BQ6ZN17 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.05■□□□□ 0.84e-6■■□□□ 11.6
LIN28BQ6ZN17 ARF1-205ENST00000473546 291 ntTSL 215.06■□□□□ 04e-6■■□□□ 11.6
LIN28BQ6ZN17 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 22e-6■■□□□ 11.6
LIN28BQ6ZN17 TNFRSF12A-203ENST00000571351 1678 ntTSL 222.09■■□□□ 1.132e-6■■□□□ 11.6
LIN28BQ6ZN17 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.91■■□□□ 1.12e-6■■□□□ 11.6
LIN28BQ6ZN17 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC17.14■□□□□ 0.332e-6■■□□□ 11.6
LIN28BQ6ZN17 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.497e-9■■□□□ 11.6
LIN28BQ6ZN17 PPP1R9B-201ENST00000513579 655 ntTSL 316.21■□□□□ 0.197e-9■■□□□ 11.6
LIN28BQ6ZN17 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.41■□□□□ 0.381e-7■■□□□ 11.6
LIN28BQ6ZN17 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.031e-7■■□□□ 11.6
LIN28BQ6ZN17 TPGS2-205ENST00000587207 687 ntTSL 326.55■■□□□ 1.849e-8■■□□□ 11.5
LIN28BQ6ZN17 TPGS2-211ENST00000590337 579 ntTSL 426.55■■□□□ 1.849e-8■■□□□ 11.5
LIN28BQ6ZN17 HUWE1-205ENST00000446750 872 ntTSL 523.02■■□□□ 1.284e-6■■□□□ 11.5
LIN28BQ6ZN17 KLHL8-204ENST00000504029 593 ntTSL 421.93■■□□□ 1.14e-6■■□□□ 11.5
LIN28BQ6ZN17 FADS1-217ENST00000544309 581 ntTSL 320.85■□□□□ 0.934e-6■■□□□ 11.5
LIN28BQ6ZN17 M6PR-213ENST00000544245 660 ntTSL 219.94■□□□□ 0.784e-6■■□□□ 11.5
LIN28BQ6ZN17 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.52■□□□□ 0.724e-6■■□□□ 11.5
LIN28BQ6ZN17 TPGS2-207ENST00000587511 582 ntTSL 218.76■□□□□ 0.599e-8■■□□□ 11.5
LIN28BQ6ZN17 FADS1-202ENST00000421879 583 ntTSL 318.14■□□□□ 0.494e-6■■□□□ 11.5
LIN28BQ6ZN17 FANCG-202ENST00000425676 2108 ntTSL 1 (best)17.66■□□□□ 0.424e-6■■□□□ 11.5
LIN28BQ6ZN17 UBL4A-204ENST00000421431 1652 ntTSL 517■□□□□ 0.314e-6■■□□□ 11.5
LIN28BQ6ZN17 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.274e-6■■□□□ 11.5
LIN28BQ6ZN17 HUWE1-201ENST00000218328 5488 ntTSL 516.72■□□□□ 0.274e-6■■□□□ 11.5
LIN28BQ6ZN17 OSBPL3-210ENST00000415952 568 ntTSL 416.4■□□□□ 0.224e-6■■□□□ 11.5
LIN28BQ6ZN17 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.42■□□□□ 0.064e-6■■□□□ 11.5
LIN28BQ6ZN17 FADS1-209ENST00000491310 525 ntTSL 515.18■□□□□ 0.024e-6■■□□□ 11.5
LIN28BQ6ZN17 FADS1-203ENST00000424501 926 ntTSL 315.12■□□□□ 0.014e-6■■□□□ 11.5
LIN28BQ6ZN17 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.034e-6■■□□□ 11.5
LIN28BQ6ZN17 M6PR-206ENST00000541507 2198 ntTSL 514.2□□□□□ -0.144e-6■■□□□ 11.5
LIN28BQ6ZN17 M6PR-209ENST00000543704 616 ntTSL 314.08□□□□□ -0.164e-6■■□□□ 11.5
LIN28BQ6ZN17 FADS1-205ENST00000448607 559 ntTSL 413.61□□□□□ -0.234e-6■■□□□ 11.5
LIN28BQ6ZN17 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.284e-6■■□□□ 11.5
LIN28BQ6ZN17 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.344e-6■■□□□ 11.5
LIN28BQ6ZN17 M6PR-201ENST00000000412 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.414e-6■■□□□ 11.5
LIN28BQ6ZN17 M6PR-208ENST00000543258 561 ntTSL 512.28□□□□□ -0.444e-6■■□□□ 11.5
LIN28BQ6ZN17 OSBPL3-207ENST00000409759 3219 ntTSL 511.88□□□□□ -0.514e-6■■□□□ 11.5
LIN28BQ6ZN17 NOL8-206ENST00000433029 1396 ntAPPRIS ALT2 TSL 511.79□□□□□ -0.524e-6■■□□□ 11.5
LIN28BQ6ZN17 COA4-202ENST00000537289 582 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.544e-6■■□□□ 11.5
LIN28BQ6ZN17 DTL-201ENST00000366991 4573 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.574e-6■■□□□ 11.5
LIN28BQ6ZN17 ZMYM4-202ENST00000441447 466 ntTSL 511.42□□□□□ -0.584e-6■■□□□ 11.5
LIN28BQ6ZN17 OSBPL3-208ENST00000409863 3490 ntTSL 1 (best)11.29□□□□□ -0.64e-6■■□□□ 11.5
LIN28BQ6ZN17 COA4-201ENST00000355693 960 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.614e-6■■□□□ 11.5
LIN28BQ6ZN17 M6PR-203ENST00000537621 581 ntTSL 211.06□□□□□ -0.644e-6■■□□□ 11.5
LIN28BQ6ZN17 COA4-204ENST00000541455 1038 ntTSL 5 BASIC10.87□□□□□ -0.674e-6■■□□□ 11.5
LIN28BQ6ZN17 PLOD1-209ENST00000491536 639 ntTSL 310.82□□□□□ -0.684e-6■■□□□ 11.5
LIN28BQ6ZN17 OSBPL3-204ENST00000409069 2614 ntTSL 1 (best) BASIC10.35□□□□□ -0.754e-6■■□□□ 11.5
LIN28BQ6ZN17 COA4-206ENST00000545127 922 ntAPPRIS P1 TSL 2 BASIC10.25□□□□□ -0.774e-6■■□□□ 11.5
LIN28BQ6ZN17 BUB1-201ENST00000302759 3507 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.844e-7■■□□□ 11.5
LIN28BQ6ZN17 SS18-203ENST00000415083 3414 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.884e-6■■□□□ 11.5
LIN28BQ6ZN17 OSBPL3-202ENST00000396429 2707 ntTSL 1 (best) BASIC9.31□□□□□ -0.924e-6■■□□□ 11.5
LIN28BQ6ZN17 KLHL8-202ENST00000425278 4049 ntTSL 1 (best) BASIC9.12□□□□□ -0.954e-6■■□□□ 11.5
LIN28BQ6ZN17 DTL-206ENST00000542077 4471 ntTSL 2 BASIC9.06□□□□□ -0.964e-6■■□□□ 11.5
LIN28BQ6ZN17 OSBPL3-203ENST00000396431 2969 ntTSL 1 (best) BASIC8.9□□□□□ -0.994e-6■■□□□ 11.5
LIN28BQ6ZN17 OSBPL3-205ENST00000409452 3344 ntTSL 1 (best)8.4□□□□□ -1.064e-6■■□□□ 11.5
LIN28BQ6ZN17 OSBPL3-206ENST00000409555 3088 ntTSL 58.3□□□□□ -1.084e-6■■□□□ 11.5
LIN28BQ6ZN17 FANCG-207ENST00000476212 484 ntTSL 38.21□□□□□ -1.14e-6■■□□□ 11.5
LIN28BQ6ZN17 KLHL8-208ENST00000512111 3245 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.14e-6■■□□□ 11.5
LIN28BQ6ZN17 OSBPL3-209ENST00000415162 534 ntTSL 48.15□□□□□ -1.14e-6■■□□□ 11.5
LIN28BQ6ZN17 KLHL8-203ENST00000498875 5175 ntTSL 1 (best) BASIC7.99□□□□□ -1.134e-6■■□□□ 11.5
LIN28BQ6ZN17 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC7.23□□□□□ -1.254e-7■■□□□ 11.5
LIN28BQ6ZN17 SORT1-206ENST00000485149 442 ntTSL 37.17□□□□□ -1.264e-6■■□□□ 11.5
LIN28BQ6ZN17 BUB1-207ENST00000466333 2501 ntTSL 1 (best)7.11□□□□□ -1.274e-7■■□□□ 11.5
LIN28BQ6ZN17 OSBPL3-211ENST00000441059 540 ntTSL 46.94□□□□□ -1.34e-6■■□□□ 11.5
LIN28BQ6ZN17 M6PR-210ENST00000543834 412 ntTSL 26.04□□□□□ -1.444e-6■■□□□ 11.5
LIN28BQ6ZN17 KLHL8-207ENST00000506985 2399 ntTSL 1 (best)5.8□□□□□ -1.484e-6■■□□□ 11.5
LIN28BQ6ZN17 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.41□□□□□ -1.544e-6■■□□□ 11.5
LIN28BQ6ZN17 MATR3-211ENST00000505625 7306 ntTSL 1 (best)5.07□□□□□ -1.64e-6■■□□□ 11.5
Retrieved 100 of 21,972 protein–RNA pairs in 370.9 ms